HHsearch alignment for GI: 254780549 and conserved domain: TIGR02794
>TIGR02794 tolA_full protein TolA; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB..
Probab=99.77 E-value=2.1e-18 Score=124.07 Aligned_cols=90 Identities=23% Similarity=0.344 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCCCCCCCCEEEEEEEEECCCC--EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-C
Q ss_conf 007899999999996--22546565553752999999987998--185335640588860589999999999999718-8
Q gi|254780549|r 174 PSQDAIAIVRNRVIA--NWNIPSDFKRFKKLRVKMHFQLNQKG--FVLGKINVDVVGGTELVRRMLRENARKAVIKSQ-A 248 (271)
Q Consensus 174 ~~~~~~~~ir~~I~~--~w~~p~~~~~~~~~~v~v~i~l~~~G--~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~-p 248 (271)
T Consensus 354 e~~~Y~~~~~~~i~~~~~~~~~~s~---~g~~c~~~i~l~pdG~~~~~~~r~~~~sG--~PYd~~~c~Aa~~AV~~~~~~ 428 (452)
T TIGR02794 354 EVDKYAAIIKQAIQQNKNLYDDPSF---RGKTCTVRIRLAPDGTVTLLSARVTKSSG--APYDPALCQAALAAVAKAALK 428 (452)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHC---CCCEEEEEEEECCCCCEEEEEEEEEECCC--CCCCHHHHHHHHHHHHHHCCC
T ss_conf 7889999999998864235673101---79889998887489857885316753688--899867769999999982787
Q ss_pred C-CCCH--H-HHHHCCEEEEEECH
Q ss_conf 9-8884--6-77612228997444
Q gi|254780549|r 249 F-RLSP--S-TYKSWRNITLFFVP 268 (271)
Q Consensus 249 ~-~~p~--~-~y~~~~~~~~~F~p 268 (271)
T Consensus 429 ~mP~Pp~~~~v~~~~~~~~~~f~p 452 (452)
T TIGR02794 429 LMPLPPSDPDVYEKFKNINLTFKP 452 (452)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 899889828999987206651029