Query gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 271
No_of_seqs 140 out of 348
Neff 9.0
Searched_HMMs 39220
Date Mon May 30 01:22:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780549.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02794 tolA_full protein To 99.8 2.1E-18 5.5E-23 124.1 9.1 90 174-268 354-452 (452)
2 COG0810 TonB Periplasmic prote 99.7 4E-17 1E-21 116.8 13.2 92 172-268 149-243 (244)
3 PRK09510 tolA cell envelope in 99.7 5.3E-19 1.3E-23 127.5 1.2 84 175-269 317-402 (402)
4 PRK10819 transport protein Ton 99.6 1.2E-14 3E-19 102.7 12.9 68 191-267 166-235 (243)
5 pfam06519 TolA TolA C-terminal 99.5 2.1E-13 5.2E-18 95.7 8.7 86 171-266 9-96 (96)
6 COG3064 TolA Membrane protein 99.0 1.4E-09 3.6E-14 73.8 7.0 84 175-268 302-387 (387)
7 TIGR01352 tonB_Cterm TonB fami 98.9 3.2E-09 8.2E-14 71.8 7.1 74 191-269 2-81 (81)
8 TIGR02794 tolA_full protein To 98.4 2.3E-07 5.7E-12 61.3 4.2 33 4-36 1-34 (452)
9 pfam03544 TonB Gram-negative b 98.0 1.3E-05 3.3E-10 51.3 5.9 72 191-267 4-78 (79)
10 COG3064 TolA Membrane protein 95.2 0.016 4.2E-07 33.6 3.0 24 2-25 10-33 (387)
11 PRK10819 transport protein Ton 94.2 0.39 1E-05 25.7 12.6 49 2-51 11-60 (243)
12 TIGR01605 PYST-D Plasmodium yo 82.9 0.67 1.7E-05 24.4 1.6 17 5-21 12-28 (55)
13 KOG2438 consensus 77.9 5 0.00013 19.4 7.0 50 179-228 191-240 (505)
14 CHL00040 rbcL ribulose-1,5-bis 72.1 3.8 9.7E-05 20.1 2.9 62 207-270 397-473 (477)
15 pfam03346 consensus 69.6 8.1 0.00021 18.2 4.9 33 1-33 1-33 (369)
16 PRK04208 rbcL ribulose bisopho 54.9 7.2 0.00018 18.5 1.6 62 207-270 389-465 (467)
17 pfam07254 DUF1434 Protein of u 43.8 19 0.00049 16.1 2.4 23 5-28 13-35 (132)
18 KOG0399 consensus 39.1 28 0.0007 15.2 5.4 78 178-270 584-668 (2142)
19 KOG1357 consensus 35.5 32 0.0008 14.9 3.9 67 175-245 88-166 (519)
20 PRK01908 electron transport co 35.3 32 0.00081 14.9 4.0 24 201-224 98-121 (205)
21 LOAD_SKIP consensus 30.9 20 0.00052 16.0 0.9 58 187-244 69-130 (168)
22 pfam07509 DUF1523 Protein of u 28.6 36 0.00092 14.5 1.8 26 6-31 5-30 (174)
23 COG5436 Predicted integral mem 28.2 42 0.0011 14.2 2.5 16 6-21 10-25 (182)
24 pfam08976 DUF1880 Domain of un 28.0 42 0.0011 14.2 2.1 16 176-191 107-122 (122)
25 pfam02731 SKIP_SNW SKIP/SNW do 26.9 29 0.00074 15.1 1.0 58 187-244 65-126 (158)
26 pfam09585 Lin0512_fam Conserve 26.1 31 0.00078 14.9 1.1 37 174-212 18-59 (113)
27 pfam05890 Ebp2 Eukaryotic rRNA 24.6 49 0.0013 13.8 2.5 75 173-258 27-109 (268)
No 1
>TIGR02794 tolA_full protein TolA; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB..
Probab=99.77 E-value=2.1e-18 Score=124.07 Aligned_cols=90 Identities=23% Similarity=0.344 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCCCCCCCCEEEEEEEEECCCC--EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC-C
Q ss_conf 007899999999996--22546565553752999999987998--185335640588860589999999999999718-8
Q gi|254780549|r 174 PSQDAIAIVRNRVIA--NWNIPSDFKRFKKLRVKMHFQLNQKG--FVLGKINVDVVGGTELVRRMLRENARKAVIKSQ-A 248 (271)
Q Consensus 174 ~~~~~~~~ir~~I~~--~w~~p~~~~~~~~~~v~v~i~l~~~G--~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~-p 248 (271)
.+..|.+.|++.|++ ||..+.++ .|..|+|+|+|.+|| +|++.++..+|| -||...||.||++||.+|. +
T Consensus 354 e~~~Y~~~~~~~i~~~~~~~~~~s~---~g~~c~~~i~l~pdG~~~~~~~r~~~~sG--~PYd~~~c~Aa~~AV~~~~~~ 428 (452)
T TIGR02794 354 EVDKYAAIIKQAIQQNKNLYDDPSF---RGKTCTVRIRLAPDGTVTLLSARVTKSSG--APYDPALCQAALAAVAKAALK 428 (452)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHC---CCCEEEEEEEECCCCCEEEEEEEEEECCC--CCCCHHHHHHHHHHHHHHCCC
T ss_conf 7889999999998864235673101---79889998887489857885316753688--899867769999999982787
Q ss_pred C-CCCH--H-HHHHCCEEEEEECH
Q ss_conf 9-8884--6-77612228997444
Q gi|254780549|r 249 F-RLSP--S-TYKSWRNITLFFVP 268 (271)
Q Consensus 249 ~-~~p~--~-~y~~~~~~~~~F~p 268 (271)
| |+|| + .|+.|++|+|+|+|
T Consensus 429 ~mP~Pp~~~~v~~~~~~~~~~f~p 452 (452)
T TIGR02794 429 LMPLPPSDPDVYEKFKNINLTFKP 452 (452)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 899889828999987206651029
No 2
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=4e-17 Score=116.84 Aligned_cols=92 Identities=18% Similarity=0.131 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00007899999999996225465655537-52999999987998185335640588860589999999999999718898
Q gi|254780549|r 172 RIPSQDAIAIVRNRVIANWNIPSDFKRFK-KLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFR 250 (271)
Q Consensus 172 ~~~~~~~~~~ir~~I~~~w~~p~~~~~~~-~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~ 250 (271)
...+.+|...+++.|.+.|+||..++..+ +++|+|.|.+++||+|.+..++.+||. +.||++|++||++..+++
T Consensus 149 ~~~~~~~~~~~~~~i~~~~~YP~~A~~~g~~G~V~V~f~i~~~G~v~~v~v~~SSg~-----~~lD~aal~air~~~~~p 223 (244)
T COG0810 149 TGPSASYLSGLRRAIRRAPRYPAQARARGIEGTVKVKFTIDPDGNVTNVRVLKSSGS-----PALDRAALEAIRKWRFKP 223 (244)
T ss_pred CCCCCCCCHHHHHHHHCCCCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCCC-----HHHHHHHHHHHHHHCCCC
T ss_conf 665433321468886446787389996778406999999899997845788623896-----788899999999725478
Q ss_pred CCHHH--HHHCCEEEEEECH
Q ss_conf 88467--7612228997444
Q gi|254780549|r 251 LSPST--YKSWRNITLFFVP 268 (271)
Q Consensus 251 ~p~~~--y~~~~~~~~~F~p 268 (271)
..+.. -..+-.+.|.|+.
T Consensus 224 ~~p~~~~~~~~i~~~f~f~~ 243 (244)
T COG0810 224 PKPGGKKVGIKITIPFKFKL 243 (244)
T ss_pred CCCCCCCCCEEEEEEEECCC
T ss_conf 88787763358999886068
No 3
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=99.73 E-value=5.3e-19 Score=127.52 Aligned_cols=84 Identities=19% Similarity=0.326 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH-
Q ss_conf 0789999999999622546565553752999999987998185335640588860589999999999999718898884-
Q gi|254780549|r 175 SQDAIAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFRLSP- 253 (271)
Q Consensus 175 ~~~~~~~ir~~I~~~w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~~p~- 253 (271)
...|...|+..|++++....+..| -.|+|+|.|.|||+|++...+ ||++ .+|.+|++|+ +..-||.||
T Consensus 317 i~~Y~~~ik~~Iq~~f~~~~~~~G---K~C~l~IkLapdG~l~s~~~~---~Gd~----~lC~AA~~Aa-k~ak~P~pPs 385 (402)
T PRK09510 317 INQYAGQIKSAIQSRFYDASSYAG---KTCTLRIKLAPDGTLLDIKKE---GGDP----ALCQAALAAA-KTAKIPKPPS 385 (402)
T ss_pred HHHHHHHHHHHHHHHHCCCHHCCC---CEEEEEEEECCCCCEEEEECC---CCCH----HHHHHHHHHH-HHCCCCCCCC
T ss_conf 788999999999987155410289---834799898588636852106---7998----9999999998-6265899988
Q ss_pred -HHHHHCCEEEEEECHH
Q ss_conf -6776122289974440
Q gi|254780549|r 254 -STYKSWRNITLFFVPS 269 (271)
Q Consensus 254 -~~y~~~~~~~~~F~p~ 269 (271)
+.|+.|++++|+|+|.
T Consensus 386 ~~Vye~~K~~~L~f~P~ 402 (402)
T PRK09510 386 QAVYEKFKNAPLDFKPQ 402 (402)
T ss_pred HHHHHHHHCCCCCCCCC
T ss_conf 79999971687310889
No 4
>PRK10819 transport protein TonB; Provisional
Probab=99.62 E-value=1.2e-14 Score=102.73 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=50.2
Q ss_pred CCCCCCCCCC-CEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHCCEEEEEEC
Q ss_conf 5465655537-52999999987998185335640588860589999999999999718898-88467761222899744
Q gi|254780549|r 191 NIPSDFKRFK-KLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFR-LSPSTYKSWRNITLFFV 267 (271)
Q Consensus 191 ~~p~~~~~~~-~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~-~p~~~y~~~~~~~~~F~ 267 (271)
.||..++..+ .+.|+|+|.++.||+|.+..++.+++.+ .||++|++||.+-.==+ .|... ...+++|+
T Consensus 166 ~YP~~A~~~giEG~V~v~fdV~~~G~V~nv~Vv~s~p~~-----~Fd~aa~~Av~~Wrf~pg~p~~~----~~~~i~f~ 235 (243)
T PRK10819 166 QYPARAQALRIEGQVKVKFDVDEDGRVDNVQILSAQPAN-----MFEREVKQAMRKWRYEAGKPGKG----LVVNIVFK 235 (243)
T ss_pred CCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCCCC-----HHHHHHHHHHHHCCCCCCCCCCC----EEEEEEEE
T ss_conf 986999976897479999998999988456999368945-----35899999999564579999877----27999999
No 5
>pfam06519 TolA TolA C-terminal. This family consists of several bacterial TolA proteins as well as two eukaryotic proteins of unknown function. Tol proteins are involved in the translocation of group A colicins. Colicins are bacterial protein toxins, which are active against Escherichia coli and other related species (See pfam01024). TolA is anchored to the cytoplasmic membrane by a single membrane spanning segment near the N-terminus, leaving most of the protein exposed to the periplasm.
Probab=99.48 E-value=2.1e-13 Score=95.68 Aligned_cols=86 Identities=17% Similarity=0.274 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 00000789999999999622546565553752999999987998185335640588860589999999999999718898
Q gi|254780549|r 171 KRIPSQDAIAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFR 250 (271)
Q Consensus 171 ~~~~~~~~~~~ir~~I~~~w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~ 250 (271)
.......|.+.|++.|+++|..+...++ -+|+|+|+|.+||.|++...+ +|+ ..++++|++||.+..+||
T Consensus 9 ~~sev~~Y~a~I~~~Iq~~~~~~~~~~G---K~C~v~I~LapdG~v~~v~~~--sGD-----~~lC~Aa~~Av~k~~~lP 78 (96)
T pfam06519 9 SGAEVDRYAGQIKQAIQSRFLDDDSFAG---KTCRVRIKLAPDGTLISVKVE--GGD-----PALCQAAKAAVAKTAKIP 78 (96)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCC---CEEEEEEEECCCCEEEEEEEC--CCC-----HHHHHHHHHHHHHCCCCC
T ss_conf 4768999999999999984488613499---978999998699569874406--799-----999999999998615799
Q ss_pred CCH--HHHHHCCEEEEEE
Q ss_conf 884--6776122289974
Q gi|254780549|r 251 LSP--STYKSWRNITLFF 266 (271)
Q Consensus 251 ~p~--~~y~~~~~~~~~F 266 (271)
+|| +.|+.+|++.|+|
T Consensus 79 ~pp~~~Vy~~~k~~~L~F 96 (96)
T pfam06519 79 KPPSQDVYEKFKNINLDF 96 (96)
T ss_pred CCCCHHHHHHHHCCCCCC
T ss_conf 896989999984476779
No 6
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=1.4e-09 Score=73.81 Aligned_cols=84 Identities=20% Similarity=0.333 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH-
Q ss_conf 0789999999999622546565553752999999987998185335640588860589999999999999718898884-
Q gi|254780549|r 175 SQDAIAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFRLSP- 253 (271)
Q Consensus 175 ~~~~~~~ir~~I~~~w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~~p~- 253 (271)
...|-..|.+.|++++-.-.+. .+-.|+|+|.|.|||++.+...+ ||++ .++.++++||-+..-+|.||
T Consensus 302 i~~Yag~ik~~Iq~rfl~~~sf---~gK~C~l~ikL~pdGtl~~~~~~---~Gd~----~lCqAalsAvAk~~kiP~pps 371 (387)
T COG3064 302 IDQYAGQIKSAIQSRFLDADSF---AGKTCRLRIKLAPDGTLLDIKPE---GGDP----ALCQAALSAVAKTAKIPKPPS 371 (387)
T ss_pred HHHHHHHHHHHHHHHHHCCCCC---CCCEEEEEEEECCCCCEEECCCC---CCCH----HHHHHHHHHHHHHCCCCCCCC
T ss_conf 7778899999999987515233---78636799887478632300006---7986----899999999987446999973
Q ss_pred -HHHHHCCEEEEEECH
Q ss_conf -677612228997444
Q gi|254780549|r 254 -STYKSWRNITLFFVP 268 (271)
Q Consensus 254 -~~y~~~~~~~~~F~p 268 (271)
+.|+.|++..|+|.|
T Consensus 372 qdVyEk~Kn~~l~fk~ 387 (387)
T COG3064 372 QDVYEKFKNAPLDFKP 387 (387)
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 6799997267877789
No 7
>TIGR01352 tonB_Cterm TonB family C-terminal domain; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria . Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins . The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores . An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin . To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane. ; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space.
Probab=98.93 E-value=3.2e-09 Score=71.79 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=61.4
Q ss_pred CCCCCCCCCC-CEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH-----HHHHCCEEEE
Q ss_conf 5465655537-529999999879981853356405888605899999999999997188988846-----7761222899
Q gi|254780549|r 191 NIPSDFKRFK-KLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFRLSPS-----TYKSWRNITL 264 (271)
Q Consensus 191 ~~p~~~~~~~-~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~~p~~-----~y~~~~~~~~ 264 (271)
.||..+...+ .+.|+|.|.|+.+|+|+++.++.+||. +.||++|++||.++++.+.+++ .+..|-.|.+
T Consensus 2 ~YP~~a~~~~~~G~V~v~~~v~~~G~v~~~~v~~Ssg~-----~~lD~~Al~a~~~~~~~P~~~~~~~~~~~~~~~~~p~ 76 (81)
T TIGR01352 2 RYPARARRRGIEGTVVVRFTVDASGRVTSVRVLKSSGN-----RALDRAALEAVRKARFEPPPPGGKKDQVVAASVTIPV 76 (81)
T ss_pred CCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEECCCCC-----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 75447881798656899998689983557888305798-----7887999999985002688878888872453688887
Q ss_pred EECHH
Q ss_conf 74440
Q gi|254780549|r 265 FFVPS 269 (271)
Q Consensus 265 ~F~p~ 269 (271)
.|++.
T Consensus 77 ~F~~~ 81 (81)
T TIGR01352 77 RFKLN 81 (81)
T ss_pred EEECC
T ss_conf 87419
No 8
>TIGR02794 tolA_full protein TolA; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB..
Probab=98.43 E-value=2.3e-07 Score=61.28 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 046999999999999999871-756545888867
Q gi|254780549|r 4 ENGLAISMILHVMFLLLLYFN-FNVQLLVPISRR 36 (271)
Q Consensus 4 ~~gL~lSi~lH~~li~l~~f~-~~~~~~~p~~~~ 36 (271)
.+.|+|||+||++||+||||+ ..++...|.+..
T Consensus 1 ~~a~~~s~~lH~~l~~~L~~~~~~~~~~~~~p~~ 34 (452)
T TIGR02794 1 ARAFLLSVLLHILLLGLLILGASLTHSSEPEPGG 34 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 8599999999999999999712330131678775
No 9
>pfam03544 TonB Gram-negative bacterial tonB protein.
Probab=98.02 E-value=1.3e-05 Score=51.25 Aligned_cols=72 Identities=19% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCCCCCCCCC-CEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH--HHHHCCEEEEEEC
Q ss_conf 5465655537-529999999879981853356405888605899999999999997188988846--7761222899744
Q gi|254780549|r 191 NIPSDFKRFK-KLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFRLSPS--TYKSWRNITLFFV 267 (271)
Q Consensus 191 ~~p~~~~~~~-~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~~p~~--~y~~~~~~~~~F~ 267 (271)
.||..+...+ .+.|.|+|.++.+|+|.+..++.+++. ..|+++|++|+.++.-.|.+.+ ....|-.+.++|+
T Consensus 4 ~YP~~A~~~~~~G~v~v~~~I~~~G~v~~~~v~~ss~~-----~~ld~~a~~~v~~~~~~P~~~~g~~v~~~~~i~i~F~ 78 (79)
T pfam03544 4 KYPREARRRGIEGTVTVRFTIDPDGSVKDVKVVKSSGH-----EILDKAALEAVRKWRFPPAPKNGKPVTVKVSVPIRFK 78 (79)
T ss_pred CCCHHHHHCCCEEEEEEEEEEECCCCEEEEEEEECCCC-----HHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEE
T ss_conf 88199997799269999999979999999999953797-----8999999999980899998929988899999989998
No 10
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=95.24 E-value=0.016 Score=33.57 Aligned_cols=24 Identities=29% Similarity=0.642 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 330469999999999999998717
Q gi|254780549|r 2 RLENGLAISMILHVMFLLLLYFNF 25 (271)
Q Consensus 2 ~l~~gL~lSi~lH~~li~l~~f~~ 25 (271)
++-+.+++|++||++||.+++++-
T Consensus 10 k~~~AiiiS~vLH~iLfalLIwgS 33 (387)
T COG3064 10 KLKRAIIISAVLHIILFALLIWGS 33 (387)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 322377699999999999999830
No 11
>PRK10819 transport protein TonB; Provisional
Probab=94.17 E-value=0.39 Score=25.73 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 330469999999999999998-71756545888867426788640675556
Q gi|254780549|r 2 RLENGLAISMILHVMFLLLLY-FNFNVQLLVPISRREMLSVDNIYNEDYHS 51 (271)
Q Consensus 2 ~l~~gL~lSi~lH~~li~l~~-f~~~~~~~~p~~~~~~i~Vd~v~~~~~~~ 51 (271)
|+.=.++||++||+.|++.++ .+++.....+ ...+.|+|.+|+......
T Consensus 11 r~~wp~llSv~lH~~lia~llyas~~~~~e~p-~~~~pisv~MV~~a~~~p 60 (243)
T PRK10819 11 RFPWPTLLSVGLHGAVVAGLLYTSVHQVIELP-APAQPISVTMVAPADLEP 60 (243)
T ss_pred CCCCCHHEHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEEECCCCCCC
T ss_conf 55620101025789999999873131003589-988771766423465689
No 12
>TIGR01605 PYST-D Plasmodium yoelii subtelomeric family PYST-D; InterPro: IPR006492 The proteins in this set represent a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. These genes are generally very short (ca. 50 residues). There are no obvious homologs to these genes in any other organism. .
Probab=82.85 E-value=0.67 Score=24.38 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 46999999999999999
Q gi|254780549|r 5 NGLAISMILHVMFLLLL 21 (271)
Q Consensus 5 ~gL~lSi~lH~~li~l~ 21 (271)
.||++|++||+.+.=+.
T Consensus 12 FGLGlSi~LhLIFYN~~ 28 (55)
T TIGR01605 12 FGLGLSITLHLIFYNVN 28 (55)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 30048899999997652
No 13
>KOG2438 consensus
Probab=77.89 E-value=5 Score=19.42 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCC
Q ss_conf 99999999962254656555375299999998799818533564058886
Q gi|254780549|r 179 IAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGT 228 (271)
Q Consensus 179 ~~~ir~~I~~~w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~~~~~~~~~~ 228 (271)
.-...+.|-|+..+-.|.-..+.++|.++|++.++|...|+++...+-++
T Consensus 191 fv~elqlIlr~lgis~g~meeG~lRvDvNiSI~~~g~~lG~RvElKNLns 240 (505)
T KOG2438 191 FVKELQLILRHLGISSGNMEEGALRVDVNISIAPDGSELGTRVELKNLNS 240 (505)
T ss_pred HHHHHHHHHHHHCCCCCCHHCCCEEEEEEEEECCCCCCCEEEEEECCCHH
T ss_conf 99999999999643644220384577544676677762323455315513
No 14
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=72.10 E-value=3.8 Score=20.11 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=37.6
Q ss_pred EEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH--------------HCCCC-CCHHHHHHCCEEEEEECHHH
Q ss_conf 999879981853356405888605899999999999997--------------18898-88467761222899744400
Q gi|254780549|r 207 HFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIK--------------SQAFR-LSPSTYKSWRNITLFFVPSK 270 (271)
Q Consensus 207 ~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~--------------~~p~~-~p~~~y~~~~~~~~~F~p~~ 270 (271)
.+.|+-.|-|.|.|- +...+-...|.+-|+++.|... ++-.. -...-.+.|++|.|+|+.-+
T Consensus 397 D~ilqaGGGi~GHPd--G~aAGA~A~RqAiEA~vq~r~~g~~~~~e~~~~l~eaak~~~eL~~Ale~W~~~~f~~~~~~ 473 (477)
T CHL00040 397 DSVLQFGGGTLGHPW--GNAPGAVANRVALEACVQARNEGRDLAREGNEIIREAAKWSPELAAACEVWKEIKFEFETVD 473 (477)
T ss_pred CEEEECCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCC
T ss_conf 579976976557998--54777999999999999876405133431579999998429899999997542246135666
No 15
>pfam03346 consensus
Probab=69.62 E-value=8.1 Score=18.23 Aligned_cols=33 Identities=9% Similarity=-0.027 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 933046999999999999999871756545888
Q gi|254780549|r 1 MRLENGLAISMILHVMFLLLLYFNFNVQLLVPI 33 (271)
Q Consensus 1 ~~l~~gL~lSi~lH~~li~l~~f~~~~~~~~p~ 33 (271)
|++..-|+.+++..++|-.+-.-+-+...+.|.
T Consensus 1 mniatkliaglvaglvltacsgggssgss~kpn 33 (369)
T pfam03346 1 MNIATKLIAGLVAGLVLTACSGGGSSGSSPKPN 33 (369)
T ss_pred CCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCC
T ss_conf 937889999887644255114788888899998
No 16
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=54.91 E-value=7.2 Score=18.53 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=37.0
Q ss_pred EEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHH--------------H-HCCCCCCHHHHHHCCEEEEEECHHH
Q ss_conf 99987998185335640588860589999999999999--------------7-1889888467761222899744400
Q gi|254780549|r 207 HFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVI--------------K-SQAFRLSPSTYKSWRNITLFFVPSK 270 (271)
Q Consensus 207 ~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~--------------~-~~p~~~p~~~y~~~~~~~~~F~p~~ 270 (271)
.+.|+-+|-|.|.|- +...+-..+|.+-|+++.++- . +.--+-...-.+.|+++.++|++-+
T Consensus 389 D~il~aGGGi~GHP~--G~aAGa~A~RqA~EA~~~g~~~g~~~~~~g~~~l~e~Ak~h~EL~~ALe~w~~~~~~~~~~~ 465 (467)
T PRK04208 389 DVVLQFGGGTLGHPW--GNAAGATANRVALEACVEARNEGRDIEKEGPDILDEAAKWSPELKAALETWKEIKFEFDTVD 465 (467)
T ss_pred CEEEECCCCCCCCCC--CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCEECCCCCC
T ss_conf 079966974147998--60778999999999999565634321000318999998539999999998620476356677
No 17
>pfam07254 DUF1434 Protein of unknown function (DUF1434). This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=43.77 E-value=19 Score=16.09 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 469999999999999998717565
Q gi|254780549|r 5 NGLAISMILHVMFLLLLYFNFNVQ 28 (271)
Q Consensus 5 ~gL~lSi~lH~~li~l~~f~~~~~ 28 (271)
++=.+|+++|+++.+++++. ||+
T Consensus 13 ~tQl~Sll~hG~l~l~iLla-PWP 35 (132)
T pfam07254 13 RTQLFSLLLHGALALLILLA-PWP 35 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 99999999999999999855-899
No 18
>KOG0399 consensus
Probab=39.05 E-value=28 Score=15.20 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEE-----EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999962254656555375299999998799818533-----564058886058999999999999971889888
Q gi|254780549|r 178 AIAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGK-----INVDVVGGTELVRRMLRENARKAVIKSQAFRLS 252 (271)
Q Consensus 178 ~~~~ir~~I~~~w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~-----~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~~p 252 (271)
..|.+++.+.+--|+|.+- -.+.+...++..+.+.|++.-. ..+.-+++ ++.+..+.|+.+-.
T Consensus 584 lydYFkQlFAQVTNPpIDP-iRE~iVmSLec~IGp~gNllE~~~eq~~rl~L~~P------vL~~~e~ealk~~~----- 651 (2142)
T KOG0399 584 LYDYFKQLFAQVTNPPIDP-IREAIVMSLECYIGPEGNLLEPGPEQCSRLILKGP------VLNEEEMEALKNDM----- 651 (2142)
T ss_pred HHHHHHHHHHHCCCCCCCH-HHHHHEEEEEEEECCCCCCCCCCHHHHCEEECCCC------CCCHHHHHHHHCCC-----
T ss_conf 9999999987503899872-55430378885136876735579667122432687------47799999985378-----
Q ss_pred HHHHHHCC--EEEEEECHHH
Q ss_conf 46776122--2899744400
Q gi|254780549|r 253 PSTYKSWR--NITLFFVPSK 270 (271)
Q Consensus 253 ~~~y~~~~--~~~~~F~p~~ 270 (271)
|..|| +|+++|+=++
T Consensus 652 ---y~~wk~k~iditf~~~~ 668 (2142)
T KOG0399 652 ---YPGWKVKEIDITFDKSE 668 (2142)
T ss_pred ---CCCCEEEEEEEEEEHHH
T ss_conf ---76640136555634542
No 19
>KOG1357 consensus
Probab=35.46 E-value=32 Score=14.87 Aligned_cols=67 Identities=12% Similarity=-0.044 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHCCCCC-CCCCCCCEEEEEEEEECCC--------CEEEEEEEECCCCCCHH---HHHHHHHHHHHH
Q ss_conf 07899999999996225465-6555375299999998799--------81853356405888605---899999999999
Q gi|254780549|r 175 SQDAIAIVRNRVIANWNIPS-DFKRFKKLRVKMHFQLNQK--------GFVLGKINVDVVGGTEL---VRRMLRENARKA 242 (271)
Q Consensus 175 ~~~~~~~ir~~I~~~w~~p~-~~~~~~~~~v~v~i~l~~~--------G~v~~~~~~~~~~~~~~---~~~~~~~~a~rA 242 (271)
-.-|...|..+|..||+.|. |+.+ . .|++.=++.-| |+....--+ +|.+=-+ .--.+.+.+..+
T Consensus 88 e~FY~Rriy~ri~Dc~~RPi~~VPG-~--~v~l~dR~S~D~n~tfk~tG~~~~~lNl-gSYNYLGFa~~~g~ca~~~~~~ 163 (519)
T KOG1357 88 ESFYSRRIYRRIRDCFERPICSVPG-A--WVDLMDRVSDDYNWTFKYTGTRSRCLNL-GSYNYLGFAQSVGPCAEASLKS 163 (519)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-C--EEEEEEEECCCCCCEEEECCCEEEEEEE-CCCCCCCCCCCCCCCCHHHHHH
T ss_conf 8999999999876653388768987-5--6883321204788558843644665420-3322334234688776189999
Q ss_pred HHH
Q ss_conf 997
Q gi|254780549|r 243 VIK 245 (271)
Q Consensus 243 i~~ 245 (271)
+.+
T Consensus 164 ~~k 166 (519)
T KOG1357 164 FDK 166 (519)
T ss_pred HHH
T ss_conf 998
No 20
>PRK01908 electron transport complex protein RnfG; Validated
Probab=35.34 E-value=32 Score=14.86 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=17.7
Q ss_pred CEEEEEEEEECCCCEEEEEEEECC
Q ss_conf 529999999879981853356405
Q gi|254780549|r 201 KLRVKMHFQLNQKGFVLGKINVDV 224 (271)
Q Consensus 201 ~~~v~v~i~l~~~G~v~~~~~~~~ 224 (271)
++.+++-+-+++||+|.|.+++..
T Consensus 98 ~G~I~llvGid~dG~I~Gv~Vl~h 121 (205)
T PRK01908 98 SGAIQLLVGADFNGTVLGVRVLEH 121 (205)
T ss_pred CCEEEEEEEECCCCEEEEEEEEEC
T ss_conf 514799999889980987997513
No 21
>LOAD_SKIP consensus
Probab=30.95 E-value=20 Score=15.95 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHCCCCCCCCCCCC---EEEEEEEEECCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 962254656555375---299999998799818533564058-8860589999999999999
Q gi|254780549|r 187 IANWNIPSDFKRFKK---LRVKMHFQLNQKGFVLGKINVDVV-GGTELVRRMLRENARKAVI 244 (271)
Q Consensus 187 ~~~w~~p~~~~~~~~---~~v~v~i~l~~~G~v~~~~~~~~~-~~~~~~~~~~~~~a~rAi~ 244 (271)
+..|++|+..+++.| +.+-+.=+|..||.=.....+... +.-..+..+++..|+-+|.
T Consensus 69 q~~WkIPp~ISNWKN~kGyTIpLDKRlaadgRglq~v~iNdkFa~lseAL~~Aer~AREev~ 130 (168)
T LOAD_SKIP 69 QNDWKIPPCVSNWKNPKGYTIPLDKRLAADGRGLQDVEINDNFAKLSEALYIAEKKAREEVR 130 (168)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97077998756773888852070577652377877531426799999999999999999999
No 22
>pfam07509 DUF1523 Protein of unknown function (DUF1523).
Probab=28.64 E-value=36 Score=14.54 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 69999999999999998717565458
Q gi|254780549|r 6 GLAISMILHVMFLLLLYFNFNVQLLV 31 (271)
Q Consensus 6 gL~lSi~lH~~li~l~~f~~~~~~~~ 31 (271)
-.++.+++|+++++++++++|.....
T Consensus 5 k~~~~~~~~~~~~~~lhY~lPq~dvv 30 (174)
T pfam07509 5 KWIVLLLFLLVLALFLHYTLPQYDVV 30 (174)
T ss_pred HHHHHHHHHHHHHHHEEECCCCCCEE
T ss_conf 14799999999998745247875389
No 23
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=28.19 E-value=42 Score=14.15 Aligned_cols=16 Identities=44% Similarity=0.876 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 6999999999999999
Q gi|254780549|r 6 GLAISMILHVMFLLLL 21 (271)
Q Consensus 6 gL~lSi~lH~~li~l~ 21 (271)
||+-++++|+.+++++
T Consensus 10 glvgA~i~HIv~vl~l 25 (182)
T COG5436 10 GLVGAIIAHIVFVLFL 25 (182)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999871
No 24
>pfam08976 DUF1880 Domain of unknown function (DUF1880). This domain is found predominantly in DJ binding protein. It has no known function.
Probab=27.98 E-value=42 Score=14.15 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 7899999999996225
Q gi|254780549|r 176 QDAIAIVRNRVIANWN 191 (271)
Q Consensus 176 ~~~~~~ir~~I~~~w~ 191 (271)
..-...+|.+|+.||.
T Consensus 107 e~iE~kLRkkIQ~CWr 122 (122)
T pfam08976 107 DPIESRLRKQIQGCWR 122 (122)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 3889999998885329
No 25
>pfam02731 SKIP_SNW SKIP/SNW domain. This domain is found in chromatin proteins.
Probab=26.87 E-value=29 Score=15.09 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=31.8
Q ss_pred HHHCCCCCCCCCCCC---EEEEEEEEECCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 962254656555375---299999998799818533564058-8860589999999999999
Q gi|254780549|r 187 IANWNIPSDFKRFKK---LRVKMHFQLNQKGFVLGKINVDVV-GGTELVRRMLRENARKAVI 244 (271)
Q Consensus 187 ~~~w~~p~~~~~~~~---~~v~v~i~l~~~G~v~~~~~~~~~-~~~~~~~~~~~~~a~rAi~ 244 (271)
+..|++|+..+++.| +.+-+.=+|..||+=.....+... ..-..+..+++..|+-+|.
T Consensus 65 q~~WkIPp~ISNWKN~kGytIpLDKRlaadgrglq~~~iNdkFa~lseAL~~Aer~AReev~ 126 (158)
T pfam02731 65 QEDWKIPPAISNWKNPKGYTIPLDKRVAADGRGLQDVEINDKFAKLSEALYIADRKAREEVR 126 (158)
T ss_pred HHCCCCCCCCCCCCCCCCCEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97167998756772888864070577764268777776315799999999999999999999
No 26
>pfam09585 Lin0512_fam Conserved hypothetical protein (Lin0512_fam). This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a well conserved motif GxGxDxHG near the N-terminus.
Probab=26.06 E-value=31 Score=14.95 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHCCCC-----CCCCCCCCEEEEEEEEECC
Q ss_conf 00789999999999622546-----5655537529999999879
Q gi|254780549|r 174 PSQDAIAIVRNRVIANWNIP-----SDFKRFKKLRVKMHFQLNQ 212 (271)
Q Consensus 174 ~~~~~~~~ir~~I~~~w~~p-----~~~~~~~~~~v~v~i~l~~ 212 (271)
.|....-+++..|..+- +| .+. +.++|.+.|.|-+..
T Consensus 18 yTkAA~RAv~DAi~hnS-lp~~~~~~g~-~~~~M~v~V~igV~~ 59 (113)
T pfam09585 18 YTKAAKRAVKDAIWHNS-LPGLFEILGL-DLEEMRVQVKVGVPR 59 (113)
T ss_pred HHHHHHHHHHHHHHHCC-HHHHHHHCCC-CHHHEEEEEEEECCC
T ss_conf 79999999999997611-5889997499-979949999996898
No 27
>pfam05890 Ebp2 Eukaryotic rRNA processing protein EBP2. This family consists of several Eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis. This family also plays a role in chromosome segregation.
Probab=24.56 E-value=49 Score=13.77 Aligned_cols=75 Identities=9% Similarity=-0.040 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHH-CCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00078999999999962-25465655537529999999879981853356405888---605899999999999997188
Q gi|254780549|r 173 IPSQDAIAIVRNRVIAN-WNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGG---TELVRRMLRENARKAVIKSQA 248 (271)
Q Consensus 173 ~~~~~~~~~ir~~I~~~-w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~~~~~~~~~---~~~~~~~~~~~a~rAi~~~~p 248 (271)
..+..-.++|.+.+.+. |+ +.+.+.+.|+.. ......+.+..-+ -..||+.+-++|+.|+.+|.-
T Consensus 27 k~~iNN~~aL~~~L~~i~~~----lpw~E~l~vt~~-------~~~~~~~~dv~DD~~RE~~Fy~qal~av~~a~~~L~~ 95 (268)
T pfam05890 27 KLTINNKAALKAKLERISLP----LPWVERLDVTST-------EPTDEQIEDVNDDFKRELAFYKQALAAVLEARKLLQK 95 (268)
T ss_pred CCCCCCHHHHHHHHHHHCCC----CCCHHEEEECCC-------CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56517799999999996078----973310330147-------8755568886634899999999999999999999998
Q ss_pred CC----CCHHHHHH
Q ss_conf 98----88467761
Q gi|254780549|r 249 FR----LSPSTYKS 258 (271)
Q Consensus 249 ~~----~p~~~y~~ 258 (271)
+. -|.|+|.+
T Consensus 96 ~gvp~~RP~DYfAE 109 (268)
T pfam05890 96 LGVPFKRPDDYFAE 109 (268)
T ss_pred CCCCCCCCCHHHHH
T ss_conf 59987696059999
Done!