Query gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 271
No_of_seqs 140 out of 348
Neff 9.0
Searched_HMMs 33803
Date Wed Jun 1 18:15:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780549.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1lr0_A TOLA protein; domain-s 99.8 4.6E-18 1.4E-22 121.8 10.1 99 166-271 18-121 (129)
2 >1tol_A G3P - TOLA, protein (f 99.8 2.6E-18 7.6E-23 123.2 8.5 98 164-271 118-216 (222)
3 >2grx_C Protein TONB; beta bar 99.6 9E-18 2.7E-22 120.1 -0.9 93 171-268 132-228 (229)
4 >2k9k_A TONB2; metal transport 98.4 1.7E-07 5.1E-12 61.6 3.8 88 177-269 14-105 (106)
5 >1u07_A TONB protein; beta-hai 98.2 7.8E-07 2.3E-11 57.8 3.2 79 186-269 8-88 (90)
6 >2qfd_A Probable ATP-dependent 37.9 4.9 0.00014 19.1 -1.1 17 255-271 55-74 (76)
7 >1wdd_A Ribulose bisphosphate 34.7 14 0.00041 16.6 0.8 42 229-270 200-256 (260)
8 >1lgh_A LH II, B800/850, light 30.5 21 0.00061 15.5 1.2 22 5-26 25-46 (56)
9 >1xau_A B- and T-lymphocyte at 27.1 15 0.00044 16.3 -0.0 25 245-269 56-86 (122)
10 >1bwv_A Rubisco, protein (ribu 25.2 15 0.00044 16.3 -0.3 42 229-270 197-253 (265)
No 1
>>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} (A:)
Probab=99.76 E-value=4.6e-18 Score=121.81 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=86.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 11000000007899999999996225465655537529999999879981853356405888605899999999999997
Q gi|254780549|r 166 EKSSRKRIPSQDAIAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIK 245 (271)
Q Consensus 166 ~~~~~~~~~~~~~~~~ir~~I~~~w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~ 245 (271)
.........+.+|.+.|+.+|++||+||.+++ .++.|+|.|.|++||+|.+..++.+||+. .||++|++||.+
T Consensus 18 ~~~~~~~~~~~~y~~~i~~~i~~~~~yP~~a~--~~~~v~V~~~i~~dG~V~~~~i~~sSG~~-----~ld~aa~~Av~~ 90 (129)
T 1lr0_A 18 LADEVGSEVTGSLDDLIVNLVSQQWRRPPSAR--NGXSVEVLIEXLPDGTITNASVSRSSGDK-----PFDSSAVAAVRN 90 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCC--TTCCEEEEEEECTTSBEEEEEEEECCSCH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCEEEEEEEEECCCCEEECCCCCCCCCH-----HHHHHHHHHHHH
T ss_conf 65543589999999999999998568998888--89789999999279988322023578678-----999999999998
Q ss_pred HCCCCCCH-----HHHHHCCEEEEEECHHHC
Q ss_conf 18898884-----677612228997444009
Q gi|254780549|r 246 SQAFRLSP-----STYKSWRNITLFFVPSKM 271 (271)
Q Consensus 246 ~~p~~~p~-----~~y~~~~~~~~~F~p~~m 271 (271)
|+||+.+| +.|..|.+|.++|+|++|
T Consensus 91 ~~~~p~~P~~~~~~~~~~~~~~~i~F~l~~~ 121 (129)
T 1lr0_A 91 VGRIPEXQQLPRATFDSLYRQRRIIFKPEDL 121 (129)
T ss_dssp HCBCGGGGGSCHHHHHHHTSEEEEEECHHHH
T ss_pred HCCCCCCCCCCHHHHHHHEEEEEEEECHHHC
T ss_conf 5679999877977875412787899861033
No 2
>>1tol_A G3P - TOLA, protein (fusion protein consisting of minor coat protein, glycine rich linker, TOLA,...; bacteriophage M13, phage infection; 1.85A {Enterobacteria phage M13} (A:)
Probab=99.76 E-value=2.6e-18 Score=123.23 Aligned_cols=98 Identities=13% Similarity=0.201 Sum_probs=82.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 11110000000078999999999962254656555375299999998799818533564058886058999999999999
Q gi|254780549|r 164 KVEKSSRKRIPSQDAIAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAV 243 (271)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~ir~~I~~~w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi 243 (271)
..............|.+.++..+++||.||.+++ ++.|+|+|.|+.||+|++..+ +||+ ++||++|+|||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~---~G~v~V~~~i~~~G~v~~v~~--sSG~-----~~lD~aA~~av 187 (222)
T 1tol_A 118 NTKNNGASGADINNYAGQIKSAIESKFYDASSYA---GKTCTLRIKLAPDGMLLDIKP--EGGD-----PALCQAALAAA 187 (222)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTCTTGGGGT---TCCEEEEEEECTTSCEEEEEE--EEEC-----HHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC---CCEEEEEEEECCCCEEEEEEE--CCCC-----HHHHHHHHHHH
T ss_conf 8888887535688999999999997268984458---988999999868964986341--6899-----99999999999
Q ss_pred HHHCCCCCC-HHHHHHCCEEEEEECHHHC
Q ss_conf 971889888-4677612228997444009
Q gi|254780549|r 244 IKSQAFRLS-PSTYKSWRNITLFFVPSKM 271 (271)
Q Consensus 244 ~~~~p~~~p-~~~y~~~~~~~~~F~p~~m 271 (271)
.+|.+|+.+ .+.|..|.+|.++|++++|
T Consensus 188 ~~~~~~~~~p~~~~~~~~~i~i~F~l~~~ 216 (222)
T 1tol_A 188 KLAKIPKPPSQAVYEVFKNAPLDFKPAAA 216 (222)
T ss_dssp HHCCCCCCSCHHHHHHHTTCEEEEECCC-
T ss_pred HHCCCCCCCCHHHHHHHEEEEEEECCCCC
T ss_conf 85889989865676663660499888876
No 3
>>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} (C:)
Probab=99.64 E-value=9e-18 Score=120.14 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 000007899999999996225465655537-5299999998799818533564058886058999999999999971889
Q gi|254780549|r 171 KRIPSQDAIAIVRNRVIANWNIPSDFKRFK-KLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAF 249 (271)
Q Consensus 171 ~~~~~~~~~~~ir~~I~~~w~~p~~~~~~~-~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~ 249 (271)
.......+...++..+..+|.||..+...+ .+.|.|+|.+++||+|.+..++.+||+. .||++|+|||.+|.+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~v~v~~~i~~~G~v~~~~i~~sSg~~-----~lD~aal~av~~~~~~ 206 (229)
T 2grx_C 132 TSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPAN-----MFEREVKNAMRRWRYE 206 (229)
T ss_dssp ----------------CCCCCCCHHHHHHTCCEEECEEEECCTTSCCEEEEECCCSSST-----TSHHHHHHHTTSCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCCCH-----HHHHHHHHHHHHCCCC
T ss_conf 42222321246254321021103899970896489999998599989268999767956-----8999999999966798
Q ss_pred CCCHHH---HHHCCEEEEEECH
Q ss_conf 888467---7612228997444
Q gi|254780549|r 250 RLSPST---YKSWRNITLFFVP 268 (271)
Q Consensus 250 ~~p~~~---y~~~~~~~~~F~p 268 (271)
+-+++. ...|-.|.|+|+.
T Consensus 207 p~~~~g~~~~~~~~~i~~~f~l 228 (229)
T 2grx_C 207 PGKPGSGIVVNILFKINGTTEI 228 (229)
T ss_dssp TTCCCSCEECCEEECCCCC---
T ss_pred CCCCCCCEEEEEEEEECCEEEC
T ss_conf 9986876699899998985210
No 4
>>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum} (A:)
Probab=98.43 E-value=1.7e-07 Score=61.56 Aligned_cols=88 Identities=15% Similarity=0.030 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCC-CEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH-
Q ss_conf 899999999996225465655537-529999999879981853356405888605899999999999997188988846-
Q gi|254780549|r 177 DAIAIVRNRVIANWNIPSDFKRFK-KLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFRLSPS- 254 (271)
Q Consensus 177 ~~~~~ir~~I~~~w~~p~~~~~~~-~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~~p~~- 254 (271)
.|...++..+..+|.||..+...+ ++.|+|+|.++.||.|.+..++.++|.. .||++|++||.+|.+++-.++
T Consensus 14 ~~~~~~~~~~~~~~~yP~~~~~~~~~G~v~v~~~I~~~G~v~~~~i~~ss~~~-----~ld~aa~~ai~~~~~~P~~~~g 88 (106)
T 2k9k_A 14 GSNQQAMPLYRVEPVYPSRALKRGVEGFVTLSFTIDTTGKAVDINVVDANPKR-----MFEREAMQALKKWKYQPQIVDG 88 (106)
T ss_dssp CCSCCCCCSSCSSCCCCSHHHHHCCCCEEEEEEEEETTTEEEEEEEEEESSSS-----SSHHHHHHHHHHCCCCCCCCSS
T ss_pred CCCCCEEEECCCCCCCCHHHHHCCCCEEEEEEEEEECCCCEEEEEEEECCCCH-----HHHHHHHHHHHHCCCCCCCCCC
T ss_conf 88874015437799997999976991099999999779989888998668918-----8999999999976788888799
Q ss_pred H-HHH-CCEEEEEECHH
Q ss_conf 7-761-22289974440
Q gi|254780549|r 255 T-YKS-WRNITLFFVPS 269 (271)
Q Consensus 255 ~-y~~-~~~~~~~F~p~ 269 (271)
. ... |-.+.++|+-+
T Consensus 89 ~~v~~~~~~~~~~f~l~ 105 (106)
T 2k9k_A 89 KAIEQPGQTVTVEFKIA 105 (106)
T ss_dssp CCSCEEEEEEEEECCCC
T ss_pred EEEEEEEEEEEEEEEEC
T ss_conf 68657879998999964
No 5
>>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} (A:)
Probab=98.22 E-value=7.8e-07 Score=57.84 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=63.4
Q ss_pred HHHHCCCCCCCCCCC-CEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHCCEEE
Q ss_conf 996225465655537-529999999879981853356405888605899999999999997188988846-776122289
Q gi|254780549|r 186 VIANWNIPSDFKRFK-KLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFRLSPS-TYKSWRNIT 263 (271)
Q Consensus 186 I~~~w~~p~~~~~~~-~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~~p~~-~y~~~~~~~ 263 (271)
++.++.||..++..+ .+.|.|+|.+++||+|.+..++.+||.. .||++|++||.+....|.++. ....+-.+.
T Consensus 8 ~~~~~~YP~~a~~~~~~G~v~v~~~i~~~G~v~~~~i~~ssg~~-----~ld~~a~~av~~~~~~P~~~g~~~~~~~~~~ 82 (90)
T 1u07_A 8 SRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPAN-----MFEREVKNAMRRWRYEPGKPGSGIVVNILFK 82 (90)
T ss_dssp ECCCCCCCHHHHHHTCCEEEEEEEEECTTSCEEEEEEEEEESSS-----SSHHHHHHHHTTCEECTTCCEEEEEEEEEEE
T ss_pred CCCCCCCCHHHHHCCCEEEEEEEEEEECCCCEEEEEEEECCCCH-----HHHHHHHHHHHHCCCCCCCCCCCEEEEEEEE
T ss_conf 77999897999977990189999999489989789999888974-----8999999999867789999788889999999
Q ss_pred EEECHH
Q ss_conf 974440
Q gi|254780549|r 264 LFFVPS 269 (271)
Q Consensus 264 ~~F~p~ 269 (271)
++|+-+
T Consensus 83 i~f~l~ 88 (90)
T 1u07_A 83 INGTTE 88 (90)
T ss_dssp EEEEEE
T ss_pred ECCEEE
T ss_conf 998941
No 6
>>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A 2rmj_A (A:1-41,A:111-145)
Probab=37.86 E-value=4.9 Score=19.12 Aligned_cols=17 Identities=29% Similarity=0.843 Sum_probs=13.4
Q ss_pred HHHHCCEEEE---EECHHHC
Q ss_conf 7761222899---7444009
Q gi|254780549|r 255 TYKSWRNITL---FFVPSKM 271 (271)
Q Consensus 255 ~y~~~~~~~~---~F~p~~m 271 (271)
.|..||+|.| -|||.+|
T Consensus 55 ~~sKWkdFnFekIpFdaaEm 74 (76)
T 2qfd_A 55 LYSKWKDFHFEKIPFDPAEM 74 (76)
T ss_dssp ECSCGGGCCSCCCBCCGGGC
T ss_pred ECCCCEECCEEECCCCHHHH
T ss_conf 03332057506479788995
No 7
>>1wdd_A Ribulose bisphosphate carboxylase large chain; rubisco, photosynthesis, alpha/beta barrel, N- methylmethionine, post-translational modification; HET: KCX CAP; 1.35A {Oryza sativa} (A:148-301,A:372-477)
Probab=34.67 E-value=14 Score=16.55 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHH--------CCC-------CCCHHHHHHCCEEEEEECHHH
Q ss_conf 058999999999999971--------889-------888467761222899744400
Q gi|254780549|r 229 ELVRRMLRENARKAVIKS--------QAF-------RLSPSTYKSWRNITLFFVPSK 270 (271)
Q Consensus 229 ~~~~~~~~~~a~rAi~~~--------~p~-------~~p~~~y~~~~~~~~~F~p~~ 270 (271)
..++|.+-|+++.|.... .+| +-...-.+.|++|.|+|++-+
T Consensus 200 a~a~r~a~ea~~~~~~~g~~~~~~~~~~l~~~a~~~~~L~~al~~W~~i~f~~~~~d 256 (260)
T 1wdd_A 200 AAANRVALEACVQARNEGRDLAREGNEIIRSACKWSPELAAACEIWKAIKFEFEPVD 256 (260)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCC
T ss_conf 999999999999851002656654559999997509799999998478668324578
No 8
>>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} (A:)
Probab=30.47 E-value=21 Score=15.53 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 4699999999999999987175
Q gi|254780549|r 5 NGLAISMILHVMFLLLLYFNFN 26 (271)
Q Consensus 5 ~gL~lSi~lH~~li~l~~f~~~ 26 (271)
..+++.+.+|+.+|.+-.|+|-
T Consensus 25 av~~~ai~VH~~vl~l~g~~w~ 46 (56)
T 1lgh_A 25 VATVVAIAVHAAVLAAPGFNWI 46 (56)
T ss_dssp HHHHHHHHHHHHHHHSGGGCHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9999999999998706771088
No 9
>>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} (A:)
Probab=27.09 E-value=15 Score=16.34 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=21.1
Q ss_pred HHCCCCCCHHHHHHCCE------EEEEECHH
Q ss_conf 71889888467761222------89974440
Q gi|254780549|r 245 KSQAFRLSPSTYKSWRN------ITLFFVPS 269 (271)
Q Consensus 245 ~~~p~~~p~~~y~~~~~------~~~~F~p~ 269 (271)
.|.||..-|..|..|.+ |+|.|+|-
T Consensus 56 ~c~~Le~~~q~~TsW~e~~n~s~FiLhF~pi 86 (122)
T 1xau_A 56 IWVPLEVGPQLYTSWEENRSVPVFVLHFKPI 86 (122)
T ss_dssp SEEECCCBTTEEEEEECSSSSCEEEEEETTC
T ss_pred EEEEEECCCCCCCCHHHCCCEEEEEEEEEEE
T ss_conf 7887001765444511158735999983000
No 10
>>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation,complex (rubisco/reaction intermediate), high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} (A:158-308,A:380-493)
Probab=25.20 E-value=15 Score=16.34 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHCC--------C-------CCCHHHHHHCCEEEEEECHHH
Q ss_conf 05899999999999997188--------9-------888467761222899744400
Q gi|254780549|r 229 ELVRRMLRENARKAVIKSQA--------F-------RLSPSTYKSWRNITLFFVPSK 270 (271)
Q Consensus 229 ~~~~~~~~~~a~rAi~~~~p--------~-------~~p~~~y~~~~~~~~~F~p~~ 270 (271)
..++|.+-|+.+.|....-. | +-...-.+.|++|.|+|+.-+
T Consensus 197 ~~a~r~a~ea~~~~~~~g~~~~~~g~~~l~~~a~~~~~l~~al~~w~~i~f~~~~~d 253 (265)
T 1bwv_A 197 ATANRVALEAMILARNENRDYLTEGPEILREAAKTCGALRTALDLWKDITFNYTSTD 253 (265)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCCCCCCSS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCEEECCCCC
T ss_conf 999999999999725631455553649999987529899999998667368336787
Done!