HHSEARCH alignment of GI: 254780549 and SCOP domain: d1lr0a_

Alignment

Probab=99.91  E-value=1.6e-24  Score=156.30  Aligned_cols=94  Identities=16%  Similarity=0.271  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             00000789999999999622546565553752999999987998185335640588860589999999999999718898
Q gi|254780549|r  171 KRIPSQDAIAIVRNRVIANWNIPSDFKRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVRRMLRENARKAVIKSQAFR  250 (271)
Q Consensus       171 ~~~~~~~~~~~ir~~I~~~w~~p~~~~~~~~~~v~v~i~l~~~G~v~~~~~~~~~~~~~~~~~~~~~~a~rAi~~~~p~~  250 (271)
                      +..++.+|.++|+++|++||++|.+++  .++.|+|+|+|++||+|.+..++.+||+     ..||++|+|||.+|+|||
T Consensus        21 ~~~~~~sy~~~i~~~I~~~W~~P~~~~--~~~~v~v~~~i~~dG~v~~~~i~~sSG~-----~~~D~sa~~Av~~a~p~P   93 (126)
T d1lr0a_          21 GSEVTGSLDDLIVNLVSQQWRRPPSAR--NGMSVEVLIEMLPDGTITNASVSRSSGD-----KPFDSSAVAAVRNVGRIP   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCTTCC--TTCCEEEEEEECTTSBEEEEEEEECCSC-----HHHHHHHHHHHHHHCBCG
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCC--CCCEEEEEEEEECCCCEEEEEEECCCCC-----HHHHHHHHHHHHHHCCCC
T ss_conf             789999999999999998568997778--8978999999918998953032047876-----678999999999854799


Q ss_pred             ----CCHHHHH-HCCEEEEEECHHHC
Q ss_conf             ----8846776-12228997444009
Q gi|254780549|r  251 ----LSPSTYK-SWRNITLFFVPSKM  271 (271)
Q Consensus       251 ----~p~~~y~-~~~~~~~~F~p~~m  271 (271)
                          +|+++|+ .||+|+|+|+|.+|
T Consensus        94 ~p~~~p~~~f~~~~r~i~l~F~Pedl  119 (126)
T d1lr0a_          94 EMQQLPRATFDSLYRQRRIIFKPEDL  119 (126)
T ss_dssp             GGGGSCHHHHHHHTSEEEEEECHHHH
T ss_pred             CCCCCCHHHHHHCCEEEEEEECHHHH
T ss_conf             99888977875401688999870471

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: TolA/TonB C-terminal domain
superfamily: TolA/TonB C-terminal domain
family: TolA
domain: TolA
species: Pseudomonas aeruginosa [TaxId: 287]