RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780549|ref|YP_003064962.1| signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
(271 letters)
>3cse_A Dihydrofolate reductase; protein-ligand complex,
oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata}
PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* (A:)
Length = 227
Score = 27.4 bits (60), Expect = 1.8
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 179 IAIVRNRVIAN-----WNIPSDFKRFKKLRVKMHFQLNQKGFVLGK 219
A++ I W + + K F+++ + Q ++G+
Sbjct: 11 AALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGR 56
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann
fold, adenine nucleotide binding domain, antibiotic
resistance; HET: MTX NAP; 1.50A {Escherichia coli K12}
PDB: 1ddr_A* 1dds_A* 1ra9_A* 1dre_A* 1drh_A* 1dyi_A*
1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A*
1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* 1rf7_A*
... (A:)
Length = 159
Score = 27.2 bits (60), Expect = 2.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 179 IAIVRNRVIAN-----WNIPSDFKRFKKL 202
A+ +RVI WN+P+D FK+
Sbjct: 6 AALAVDRVIGMENAMPWNLPADLAWFKRN 34
>2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim,
oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A
{Staphylococcus aureus} PDB: 2w9g_A* 3fyw_X* 3fyv_X*
3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3fqc_A* 3fqz_A* 3f0u_X*
3fqf_A* 3fqo_A* 3fqv_A* 2w9s_A* 2w9t_A (A:)
Length = 159
Score = 27.2 bits (60), Expect = 2.4
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 179 IAIVRNRVIAN-----WNIPSDFKRFKKL 202
+A RVI W++P+D K KKL
Sbjct: 7 VAHDLQRVIGFENQLPWHLPNDLKHVKKL 35
>2cs8_A KIAA0535 protein; ST18, zinc-finger, C2HC, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} (A:)
Length = 108
Score = 27.1 bits (59), Expect = 2.7
Identities = 9/62 (14%), Positives = 14/62 (22%)
Query: 79 QENGDRFSDQTKTHATENETKRSSSSKGEQALKESALLRMPVSPYDKQKISKATNKEQDL 138
NG S + + + G + P + Q I K
Sbjct: 47 PLNGASLSWKLNKQELPHCPLPGCNGLGHVNNVFVTHRSLSGCPLNAQVIKKGKVSSGPS 106
Query: 139 QG 140
G
Sbjct: 107 SG 108
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate,
oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda}
PDB: 3ia5_A (A:)
Length = 162
Score = 26.8 bits (59), Expect = 3.1
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 179 IAIVRNRVIAN-----WNIPSDFKRFKKL 202
A+ NRVI W++P++ + FK+
Sbjct: 7 AALANNRVIGLDNKMPWHLPAELQLFKRA 35
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A
{Geobacillus stearothermophilus} (A:)
Length = 164
Score = 26.9 bits (59), Expect = 3.4
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 179 IAIVRNRVIAN-----WNIPSDFKRFKKL 202
+A+ NRVI W++P+D FK++
Sbjct: 6 VAMDENRVIGKDNRLPWHLPADLAYFKRV 34
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, structurual genomics; 2.20A
{Pseudomonas aeruginosa PAO1} (A:1-131,A:320-340)
Length = 152
Score = 26.1 bits (57), Expect = 5.1
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 219 KINVDVVG-----GTELVRRMLRENARKAVIKSQAFRLSPSTYKSWRNITLFFVP 268
+NV VVG G LV + + + A S + +L
Sbjct: 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRXGFAESSLRVGD 60
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase,
purine nucleotide, structural genomics, NPPSFA; 2.80A
{Thermus thermophilus HB8} (A:1-114,A:184-417)
Length = 348
Score = 25.8 bits (56), Expect = 5.6
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 127 KISKATNKEQDLQGI-SFAEKKSIDTVVVRPD 157
+++ D++ + +A + ID +V P+
Sbjct: 39 ALAELVPWNGDVEALADWALAEGIDLTLVGPE 70
>3e0b_A Dihydrofolate reductase; oxidoreductase; HET: NAP N22; 2.25A
{Bacillus anthracis} PDB: 3dat_A* 2qk8_A* 3fl8_A*
3fl9_A* 2kgk_A* (A:)
Length = 166
Score = 25.8 bits (56), Expect = 7.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 179 IAIVRNRVIAN-----WNIPSDFKRFKKL 202
+A+ NRVI W +PS+ + KK
Sbjct: 11 VAMDENRVIGKDNNLPWRLPSELQYVKKT 39
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1,
cytochrome P450, endoplasmic reticulum, fatty acid
biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM;
1.62A {Homo sapiens} PDB: 2iag_A* (A:79-341,A:433-498)
Length = 329
Score = 25.3 bits (54), Expect = 7.8
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 1 MRLENGLAISMILHVMFLLLLYFNF 25
+RL A++ I +FL+L++ +
Sbjct: 261 LRLGRSYAVNSIKQFVFLVLVHLDL 285
>1e3o_C Octamer-binding transcription factor 1; transcription
factor, POU domain, dimer, DNA binding; 1.9A {Homo
sapiens} (C:1-91)
Length = 91
Score = 25.2 bits (55), Expect = 9.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 197 KRFKKLRVKMHFQLNQKGFVLGKINVDVVGGTELVR 232
K FK+ R+K+ F G +GK+ + T + R
Sbjct: 14 KTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISR 49
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.131 0.359
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,867,783
Number of extensions: 78745
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 13
Length of query: 271
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 184
Effective length of database: 2,015,014
Effective search space: 370762576
Effective search space used: 370762576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)