HHsearch alignment for GI: 254780551 and conserved domain: COG1291

>COG1291 MotA Flagellar motor component [Cell motility and secretion].
Probab=98.98  E-value=1.4e-07  Score=63.95  Aligned_cols=105  Identities=16%  Similarity=0.196  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r  110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS  189 (230)
Q Consensus       110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA  189 (230)
T Consensus       122 ~~~I~~~me~Ei~~~ee~~~~~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~----p~~LG~~iA~Alv~T~~Gi~~a  197 (266)
T COG1291         122 PEEIEALMEEEIETMEERHEKPAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDD----PAELGALIAAALVGTLYGIFLA  197 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999998753899999988458266699999999999882799----7888889999999999999999


Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999----999999999999999999
Q gi|254780551|r  190 IPSSIAYNKFIEDS----KKFAMQMEGFANEFSAIL  221 (230)
Q Consensus       190 IPa~~~yn~l~~rv----~~~~~~le~~a~~~~~~l  221 (230)
T Consensus       198 ---y~~~~P~a~kLk~~~~~e~~~~~~i~e~ll~i~  230 (266)
T COG1291         198 ---YGLFGPLANKLKQKSDEEVKLKEIIIEGLLAIQ  230 (266)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ---897868899998888999999999999999995