HHsearch alignment for GI: 254780551 and conserved domain: COG1291
>COG1291 MotA Flagellar motor component [Cell motility and secretion].
Probab=98.98 E-value=1.4e-07 Score=63.95 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
T Consensus 122 ~~~I~~~me~Ei~~~ee~~~~~a~~~~~~g~~aPa~GivgaV~GlI~~l~~l~~----p~~LG~~iA~Alv~T~~Gi~~a 197 (266)
T COG1291 122 PEEIEALMEEEIETMEERHEKPAHAFTTAGDYAPAFGIVGAVMGLIHALGNLDD----PAELGALIAAALVGTLYGIFLA 197 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999998753899999988458266699999999999882799----7888889999999999999999
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999----999999999999999999
Q gi|254780551|r 190 IPSSIAYNKFIEDS----KKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 190 IPa~~~yn~l~~rv----~~~~~~le~~a~~~~~~l 221 (230)
T Consensus 198 ---y~~~~P~a~kLk~~~~~e~~~~~~i~e~ll~i~ 230 (266)
T COG1291 198 ---YGLFGPLANKLKQKSDEEVKLKEIIIEGLLAIQ 230 (266)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---897868899998888999999999999999995