HHsearch alignment for GI: 254780551 and conserved domain: PRK08124

>PRK08124 flagellar motor protein MotA; Validated.
Probab=99.20  E-value=1.7e-08  Score=69.32  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r  110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS  189 (230)
Q Consensus       110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA  189 (230)
T Consensus       122 ~~~i~~~L~~ei~~~~~r~~~~~~v~~~~~~~aPafGmiGtvlGLI~~L~~l~---d-p~~iG~~mA~ALvtT~yGvllA  197 (263)
T PRK08124        122 AEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIGLIAALGNLN---D-IEKLGHAISAAFVATLLGIFTG  197 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999987314799999987367759999999999987259---9-9999988999999999999999


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9-99999999999999999999999999999999
Q gi|254780551|r  190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAILS  222 (230)
Q Consensus       190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~  222 (230)
T Consensus       198 n~~~~PiA~kl~~~~~~e~~~~~~i~egil~i~~  231 (263)
T PRK08124        198 YVLWHPFANKLKRKSKEEIEKKYIIIEGVLAIQE  231 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999889999998999999998999999999868