HHsearch alignment for GI: 254780551 and conserved domain: PRK08124
>PRK08124 flagellar motor protein MotA; Validated.
Probab=99.20 E-value=1.7e-08 Score=69.32 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
T Consensus 122 ~~~i~~~L~~ei~~~~~r~~~~~~v~~~~~~~aPafGmiGtvlGLI~~L~~l~---d-p~~iG~~mA~ALvtT~yGvllA 197 (263)
T PRK08124 122 AEFIRDVLEEEIEAMEERHAAGAAIFTQAGTYAPTLGVLGAVIGLIAALGNLN---D-IEKLGHAISAAFVATLLGIFTG 197 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---C-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999987314799999987367759999999999987259---9-9999988999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-99999999999999999999999999999999
Q gi|254780551|r 190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAILS 222 (230)
Q Consensus 190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~ 222 (230)
T Consensus 198 n~~~~PiA~kl~~~~~~e~~~~~~i~egil~i~~ 231 (263)
T PRK08124 198 YVLWHPFANKLKRKSKEEIEKKYIIIEGVLAIQE 231 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999889999998999999998999999999868