HHsearch alignment for GI: 254780551 and conserved domain: PRK08456
>PRK08456 flagellar motor protein MotA; Validated.
Probab=99.27 E-value=4.6e-09 Score=72.76 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r 110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS 189 (230)
Q Consensus 110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA 189 (230)
T Consensus 121 ~~~i~~~Le~ei~~~~~r~~~~~~~~~~~~~~aPafGmiGtvlGLI~~l~~l~----dp~~iG~~mA~ALvtTfyGvllA 196 (257)
T PRK08456 121 LEEIKESMEIQIEELEEYYHGAAHYWITAGETCPTMGLVGAVMGLMLALQLLD----NPAEMAAGIAGAFTATVTGIMGS 196 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999997336899999987458879999999999998069----99999989999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-9999999999999999999999999999999998
Q gi|254780551|r 190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ 224 (230)
Q Consensus 190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~ 224 (230)
T Consensus 197 n~v~~PiA~KL~~~~~~e~~~~~~i~eGil~I~~g~ 232 (257)
T PRK08456 197 YALFGPWGHKMKAKSKDIIKEKTVILEAIKGIAEGA 232 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999789999999999999999987799