HHsearch alignment for GI: 254780551 and conserved domain: PRK08456

>PRK08456 flagellar motor protein MotA; Validated.
Probab=99.27  E-value=4.6e-09  Score=72.76  Aligned_cols=111  Identities=18%  Similarity=0.185  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998287125678643049999999999999999641135301677777999999999999999
Q gi|254780551|r  110 QDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISILLGLCVS  189 (230)
Q Consensus       110 ~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa~GL~VA  189 (230)
T Consensus       121 ~~~i~~~Le~ei~~~~~r~~~~~~~~~~~~~~aPafGmiGtvlGLI~~l~~l~----dp~~iG~~mA~ALvtTfyGvllA  196 (257)
T PRK08456        121 LEEIKESMEIQIEELEEYYHGAAHYWITAGETCPTMGLVGAVMGLMLALQLLD----NPAEMAAGIAGAFTATVTGIMGS  196 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999997336899999987458879999999999998069----99999989999999999999999


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9-9999999999999999999999999999999998
Q gi|254780551|r  190 I-PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ  224 (230)
Q Consensus       190 I-Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~  224 (230)
T Consensus       197 n~v~~PiA~KL~~~~~~e~~~~~~i~eGil~I~~g~  232 (257)
T PRK08456        197 YALFGPWGHKMKAKSKDIIKEKTVILEAIKGIAEGA  232 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             999999999999789999999999999999987799