HHsearch alignment for GI: 254780551 and conserved domain: TIGR02796
>TIGR02796 tolQ protein TolQ; InterPro: IPR014163 TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses proton motive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this entry describes TolQ specifically, as found in tol-pal operons. A close homologue, excluded from this entry, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species..
Probab=100.00 E-value=0 Score=475.01 Aligned_cols=212 Identities=42% Similarity=0.714 Sum_probs=204.5
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC--CCCHHHHHHH
Q ss_conf 69999983888799999999999999999999999999999754699999862289978999982027--8237999999
Q gi|254780551|r 12 SIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKSLKNH--HNIGLAAIFM 89 (230)
Q Consensus 12 sl~~l~~~gg~~v~~Vm~~L~i~Si~~~~iiier~~~~~~~~~~~~~f~~~~~~~~~l~~~~~~l~~~--~~~~~~~i~~ 89 (230)
T Consensus 1 s~~~Lf~qA~~vVk~Vml~Ll~~Si~SWaiIf~K~~~~~~~~~~~~~Fe~~FWsG~~l~~LY~~~~~~~~~~~g~~~iF~ 80 (219)
T TIGR02796 1 SILDLFLQASFVVKLVMLILLLASIISWAIIFQKLFIFRRARREAEEFEDRFWSGGDLEKLYASLSNRKDRTSGLESIFC 80 (219)
T ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 97789897059999999999999999999999999999999999998887444887878999873114554576789999
Q ss_pred HHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
Q ss_conf 9999774431025---68923389999999999999999999828712567864304999999999999999964113-5
Q gi|254780551|r 90 SAMSEWKKSCDKG---ARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGY-Y 165 (230)
Q Consensus 90 ~~~~~~~~~~~~~---~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~-g 165 (230)
T Consensus 81 aGf~Ef~r~~~~~~~s~~~~~~~~~~~~Ram~~~~~rE~~~Le~~L~fLATvGS~sPfIGLFGTVWGIM~sF~~ig~~~~ 160 (219)
T TIGR02796 81 AGFKEFSRLKSKGGRSELDPEVVIERIDRAMRVALNRELEKLESGLPFLATVGSTSPFIGLFGTVWGIMHSFQAIGGSKN 160 (219)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999875774268876686999999999999999999998861465032243222652443330547889999876764
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3016-777779999999999999999999999999999999999999999999999999
Q gi|254780551|r 166 SNNV-VSIPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSR 223 (230)
Q Consensus 166 ~~~~-~~a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r 223 (230)
T Consensus 161 qatLA~VAPGIAEALiATAiGLfAAIPAViAYN~f~~~~~~i~~~~e~F~~EF~~iL~R 219 (219)
T TIGR02796 161 QATLAVVAPGIAEALIATAIGLFAAIPAVIAYNKFSTQVNKIEQRYENFADEFSSILQR 219 (219)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 34555415247899999999999998999999999999999999988899999975029