HHsearch alignment for GI: 254780551 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=95.17 E-value=0.22 Score=27.12 Aligned_cols=39 Identities=8% Similarity=0.117 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_conf 799999999999999999999999999999---754699999
Q gi|254780551|r 23 AVKCIITLLFIFSILSWSVIIQKSVNFITL---RRQFREFEQ 61 (230)
Q Consensus 23 ~v~~Vm~~L~i~Si~~~~iiier~~~~~~~---~~~~~~f~~ 61 (230)
T Consensus 368 ~aq~~L~~~g~L~L~~~~~i~WrvVYrsv~~rL~q~t~Al~r 409 (1052)
T TIGR02956 368 VAQLGLLILGLLGLVILVFIMWRVVYRSVILRLNQHTQALLR 409 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999999999999999999998777660555678999999