HHsearch alignment for GI: 254780551 and conserved domain: pfam01618
>pfam01618 MotA_ExbB MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.
Probab=100.00 E-value=4.7e-37 Score=239.20 Aligned_cols=136 Identities=23% Similarity=0.385 Sum_probs=122.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 82379999999999774431025689233899999999999999999998287125678643049999999999999999
Q gi|254780551|r 80 HNIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQ 159 (230)
Q Consensus 80 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~ 159 (230)
T Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~ame~~~~~e~~~le~~l~~L~ti~~~AP~lGLlGTV~Gmi~~F~ 82 (139)
T pfam01618 3 PLSAIEILAQLGFLSFVRLGLAPLIERGAFKEFLRLALEEALDAELRKLERGLTILATIGSVAPFLGLLGTVWGIIHAFI 82 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87099999998828999987010235421489999999999999999998486999999989479899999999999999
Q ss_pred HHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 641135301-67777799999999999999999999999999999999999999999
Q gi|254780551|r 160 SIAGYYSNN-VVSIPGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFAN 215 (230)
Q Consensus 160 ~ia~~g~~~-~~~a~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~ 215 (230)
T Consensus 83 ~i~~~g~~~~~~~a~GI~~ALitTa~GL~vAIpa~i~yn~l~~r~~~~~~~~E~f~~ 139 (139)
T pfam01618 83 HIGQTGQADPAVVAPGISEALVATALGLFVAIPALLAYNVLKRKVEQLSLKIEAFAE 139 (139)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 887356776888876999999999999999999999999999999999999987609