Query gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 230
No_of_seqs 119 out of 2288
Neff 6.9
Searched_HMMs 33803
Date Wed Jun 1 18:00:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780551.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1rkt_A Protein YFIR; transcri 26.1 29 0.00085 14.1 1.3 37 191-227 45-81 (82)
2 >1wu7_A Histidyl-tRNA syntheta 23.6 22 0.00064 14.8 0.3 13 150-162 17-29 (63)
3 >2rek_A Putative TETR-family t 22.6 42 0.0013 13.1 2.8 34 190-223 47-80 (82)
4 >2qtq_A Transcriptional regula 18.2 53 0.0016 12.5 3.4 28 194-221 52-79 (81)
5 >3b81_A Transcriptional regula 17.3 55 0.0016 12.4 1.7 32 194-225 47-78 (80)
6 >2ev1_A Hypothetical protein R 16.2 59 0.0017 12.3 3.6 47 127-183 47-93 (95)
7 >3dpj_A Transcription regulato 15.3 62 0.0018 12.1 2.8 29 195-223 45-73 (79)
8 >2hyj_A Putative TETR-family t 14.9 59 0.0017 12.3 0.8 54 173-230 31-84 (200)
9 >3bz1_Z PSII-Z, photosystem II 14.7 64 0.0019 12.0 3.1 18 178-195 11-28 (62)
10 >1vi0_A Transcriptional regula 14.7 65 0.0019 12.0 2.8 54 173-230 27-80 (206)
No 1
>>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} (A:1-82)
Probab=26.14 E-value=29 Score=14.11 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999999998510
Q gi|254780551|r 191 PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227 (230)
Q Consensus 191 Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~ 227 (230)
+--.+|+||.+|-+-+..-++....++.+.+....+.
T Consensus 45 s~~t~Y~~F~~k~~Ll~~~~~~~~~~~~~~l~~~~~~ 81 (82)
T 1rkt_A 45 SRGGVYLYFSSTEEXFRRIIETGLDEGLRKLDKSAEH 81 (82)
T ss_dssp CHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9652101689999999999999999999999987526
No 2
>>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} (A:166-228)
Probab=23.64 E-value=22 Score=14.83 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999641
Q gi|254780551|r 150 AVLGMMGFFQSIA 162 (230)
Q Consensus 150 TV~Gmi~aF~~ia 162 (230)
||..+++-|+.++
T Consensus 17 tVFSIvDR~HKvS 29 (63)
T 1wu7_A 17 SVFSIIDRYHKIS 29 (63)
T ss_dssp HHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHH
T ss_conf 7888888886543
No 3
>>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3} (A:1-82)
Probab=22.56 E-value=42 Score=13.11 Aligned_cols=34 Identities=6% Similarity=-0.023 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999
Q gi|254780551|r 190 IPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSR 223 (230)
Q Consensus 190 IPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r 223 (230)
++.-.+|+||.+|-+-+..-++....++...+..
T Consensus 47 vs~~~~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~ 80 (82)
T 2rek_A 47 VGSATLHRHFPSRWGLLQAVFQERVAQLCDEARS 80 (82)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4998999885998999999999999999999999
No 4
>>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A* (A:1-81)
Probab=18.16 E-value=53 Score=12.54 Aligned_cols=28 Identities=4% Similarity=0.000 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999
Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230)
.+|+||.+|-+-+..-++....++.+.+
T Consensus 52 ~iY~~F~sk~~L~~~~~~~~~~~~~~~l 79 (81)
T 2qtq_A 52 LVKYYFGNKAGLLKALLDRDXENIVKSV 79 (81)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9977756599999999999999999999
No 5
>>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824} (A:1-80)
Probab=17.29 E-value=55 Score=12.42 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999985
Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAILSRQT 225 (230)
Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~ 225 (230)
.+|+||.+|-+-+..-++....++...+....
T Consensus 47 ~~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~ 78 (80)
T 3b81_A 47 ALYHYFSSKEECADAAIENRVAFFSNEVLKES 78 (80)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99871699999999999999999999999987
No 6
>>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A* (A:1-75,A:169-188)
Probab=16.20 E-value=59 Score=12.26 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=35.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 998287125678643049999999999999999641135301677777999999999
Q gi|254780551|r 127 EITEKLSFLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIPGIIESLISIL 183 (230)
Q Consensus 127 ~l~~~l~~L~ti~s~AP~lGLlGTV~Gmi~aF~~ia~~g~~~~~~a~GIseALitTa 183 (230)
-++++..+=..=.+.+||+ ..+-..++-.|.....++.| |+||++..
T Consensus 47 Ll~rGit~deIr~a~~PmL---------LasrrviGDD~~~~~~~~~~-~~~~~~~~ 93 (95)
T 2ev1_A 47 LLEQGITPDEIRATNPPLL---------LATRHLVGDDGATELDIAKG-SQALVSQI 93 (95)
T ss_dssp HHHTTCCHHHHHHSSSCTT---------HHHHHHTTCCTCCHHHHHHH-HHHHHHHH
T ss_pred HHHCCCCHHHHHHCCCHHH---------HHHHHHCCCCCCCCHHHHHH-HHHHHHHH
T ss_conf 9976988777612350566---------66777307899981778899-99999988
No 7
>>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi} (A:1-79)
Probab=15.32 E-value=62 Score=12.12 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999
Q gi|254780551|r 195 AYNKFIEDSKKFAMQMEGFANEFSAILSR 223 (230)
Q Consensus 195 ~yn~l~~rv~~~~~~le~~a~~~~~~l~r 223 (230)
+|+||.+|-+-+..-++....++.+.+..
T Consensus 45 ~Y~~F~~ke~L~~~~~~~~~~~~~~~~~~ 73 (79)
T 3dpj_A 45 FYYHFKTKDEILAEVIRLRLARTAQXLAD 73 (79)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77855999999999999999999999999
No 8
>>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} (A:)
Probab=14.86 E-value=59 Score=12.26 Aligned_cols=54 Identities=11% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7799999999999999999999999999999999999999999999999998510469
Q gi|254780551|r 173 PGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEGNIS 230 (230)
Q Consensus 173 ~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~~~~ 230 (230)
.+++-.=|+..+|...+ .+|+||.+|-+-+..-++....++...+....+...+
T Consensus 31 ~~~t~~~IA~~agvs~~----tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (200)
T 2hyj_A 31 DGITIGRLAEELEMSKS----GVHKHFGTKETLQISTLDKAFVDFWHRVVEPALAEPP 84 (200)
T ss_dssp GGCCHHHHHHHHTCCHH----HHHTTCSSHHHHHHHHHHHHHHHHHHHHTGGGGGSCT
T ss_pred CCCCHHHHHHHHCCCHH----HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 41679999998783801----2765658999999999999989999999999752998
No 9
>>3bz1_Z PSII-Z, photosystem II reaction center protein Z; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz2_Z* (Z:)
Probab=14.69 E-value=64 Score=12.02 Aligned_cols=18 Identities=17% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999
Q gi|254780551|r 178 SLISILLGLCVSIPSSIA 195 (230)
Q Consensus 178 ALitTa~GL~VAIPa~~~ 195 (230)
||+.+-+=|+|++|.+++
T Consensus 11 ALi~~Sf~lvvgVPVv~A 28 (62)
T 3bz1_Z 11 ALVILSFVMVIGVPVAYA 28 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHEEEEEEEE
T ss_conf 999999886152258998
No 10
>>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} (A:)
Probab=14.66 E-value=65 Score=12.02 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7799999999999999999999999999999999999999999999999998510469
Q gi|254780551|r 173 PGIIESLISILLGLCVSIPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEGNIS 230 (230)
Q Consensus 173 ~GIseALitTa~GL~VAIPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~~~~ 230 (230)
.+++-.-|+..+|+..+ .+|+||.+|-+-+..-++....++.+.+....+..-.
T Consensus 27 ~~~ti~~Ia~~agvs~~----tiY~yF~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T 1vi0_A 27 HQSQVSKIAKQAGVADG----TIYLYFKNKEDILISLFKEKXGQFIERXEEDIKEKAT 80 (206)
T ss_dssp GGCCHHHHHHHHTSCHH----HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCCHHHHHHHHCCCHH----HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 40779999999598875----7986089879999999998877999988876412201
Done!