Query gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 230
No_of_seqs 119 out of 2288
Neff 6.9
Searched_HMMs 13730
Date Wed Jun 1 09:25:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780551.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkta1 a.4.1.9 (A:2-82) Hypot 29.0 13 0.00095 13.8 1.9 36 191-226 44-79 (81)
2 d2fbqa1 a.4.1.9 (A:2-80) Trans 28.4 13 0.00097 13.8 3.0 33 194-226 40-72 (79)
3 d2o7ta1 a.4.1.9 (A:1-78) Trans 23.4 17 0.0012 13.2 3.2 34 194-227 43-76 (78)
4 d2fd5a1 a.4.1.9 (A:1-76) Proba 22.8 8.7 0.00064 14.9 0.1 27 195-221 44-70 (76)
5 d1dlca3 f.1.3.1 (A:61-289) del 17.8 22 0.0016 12.5 1.4 62 85-152 80-141 (229)
6 d2g7sa1 a.4.1.9 (A:3-76) Putat 17.8 22 0.0016 12.5 2.8 28 194-221 40-67 (74)
7 d2gfna1 a.4.1.9 (A:4-80) Proba 16.2 24 0.0017 12.3 3.4 35 192-226 40-74 (77)
8 d1zk8a1 a.4.1.9 (A:6-77) Trans 14.4 27 0.0019 12.0 1.6 29 194-222 39-67 (72)
9 d1vi0a1 a.4.1.9 (A:6-77) Hypot 14.2 27 0.002 11.9 4.2 36 191-226 34-69 (72)
10 d1jt6a1 a.4.1.9 (A:2-72) Multi 13.3 29 0.0021 11.8 3.8 35 190-224 33-67 (71)
No 1
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=28.97 E-value=13 Score=13.83 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999851
Q gi|254780551|r 191 PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230)
Q Consensus 191 Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230)
+--.+|+||.+|-+-+..-++....++...+....+
T Consensus 44 s~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~l~~~~e 79 (81)
T d1rkta1 44 SRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAE 79 (81)
T ss_dssp CHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 988998888499999999999999999999999875
No 2
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.38 E-value=13 Score=13.77 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999851
Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230)
Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230)
.+|+||.+|-+-+..-++....++...+.+..+
T Consensus 40 s~y~~F~~K~~l~~~~~~~~~~~~~~~~~~~~~ 72 (79)
T d2fbqa1 40 AVNYHFGSKKALIQAVFSRFLGPFCASLEKELD 72 (79)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 787877699999997799999999999999975
No 3
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=23.39 E-value=17 Score=13.21 Aligned_cols=34 Identities=9% Similarity=-0.020 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999998510
Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227 (230)
Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~~ 227 (230)
.+|+||.+|-+-+..-++....++.+......++
T Consensus 43 t~y~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~ 76 (78)
T d2o7ta1 43 TLYRNFPDRFTLDMACAQYLFNVVISLQLQAIST 76 (78)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999886999999999999999999999998738
No 4
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.77 E-value=8.7 Score=14.86 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999
Q gi|254780551|r 195 AYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 195 ~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230)
+|+||.+|-+-+..-++....++.+.+
T Consensus 44 ~Y~~F~~Ke~L~~~~~~~~~~~~~~~l 70 (76)
T d2fd5a1 44 FYAHFQSKDALMLEAFEQLLGKRRELL 70 (76)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 042089999999999999999999998
No 5
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=17.80 E-value=22 Score=12.49 Aligned_cols=62 Identities=18% Similarity=0.304 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999977443102568923389999999999999999999828712567864304999999999
Q gi|254780551|r 85 AAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSSAGLLVGILGAVL 152 (230)
Q Consensus 85 ~~i~~~~~~~~~~~~~~~~~~~~~~~e~i~~~le~~~~~e~~~l~~~l~~L~ti~s~AP~lGLlGTV~ 152 (230)
...+..+++.|.+.... ...+ ...+.+.+.. ......+.+.++.+..-+.--|++.++-..-
T Consensus 80 l~~Y~~al~~w~~np~~-~~~~-~~~~~v~~~f----~~~~~~f~~~l~~F~~~~ye~~lLp~YaqaA 141 (229)
T d1dlca3 80 VEDYVSALSSWQKNPVS-SRNP-HSQGRIRELF----SQAESHFRNSMPSFAISGYEVLFLTTYAQAA 141 (229)
T ss_dssp HHHHHHHHHHHHHSCTT-SCCH-HHHHHHHHHH----HHHHHHHHHHGGGGSCTTCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC-CCCH-HHHHHHHHHH----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999858887-7881-4799999999----9999999987899746883455699999999
No 6
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=17.76 E-value=22 Score=12.49 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999
Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAIL 221 (230)
Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l 221 (230)
.+|+||.+|-+-+..-++....++...+
T Consensus 40 ~iY~~F~sK~~L~~~~~~~~~~~~~~~~ 67 (74)
T d2g7sa1 40 SIHHHFPSKSDLVCKLVSQYRQEAEAGI 67 (74)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 6988883999999999999999999999
No 7
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=16.23 E-value=24 Score=12.26 Aligned_cols=35 Identities=3% Similarity=-0.028 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999851
Q gi|254780551|r 192 SSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230)
Q Consensus 192 a~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230)
--.+|+||.+|-+-+..-++....++.+.+..-.+
T Consensus 40 ~~~lY~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 74 (77)
T d2gfna1 40 TGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILD 74 (77)
T ss_dssp HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 77998888399999999999999999999999983
No 8
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000 {Bacillus cereus [TaxId: 1396]}
Probab=14.39 E-value=27 Score=11.97 Aligned_cols=29 Identities=10% Similarity=-0.191 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999
Q gi|254780551|r 194 IAYNKFIEDSKKFAMQMEGFANEFSAILS 222 (230)
Q Consensus 194 ~~yn~l~~rv~~~~~~le~~a~~~~~~l~ 222 (230)
.+|+||.+|-+-+..-++....++.+.+.
T Consensus 39 slY~yF~~k~~L~~~~~~~~~~~~~~~l~ 67 (72)
T d1zk8a1 39 SLYNHVKGLQDVRKNLGIYGIKKLHNRLE 67 (72)
T ss_dssp HHTTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99898839999999999999999999999
No 9
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=14.22 E-value=27 Score=11.94 Aligned_cols=36 Identities=8% Similarity=0.126 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999999999999851
Q gi|254780551|r 191 PSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTE 226 (230)
Q Consensus 191 Pa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~~~ 226 (230)
+--.+|+||.+|-+-+..-++....++.+.+....+
T Consensus 34 s~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~ 69 (72)
T d1vi0a1 34 ADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIK 69 (72)
T ss_dssp CHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 987998888399999999999999999999999988
No 10
>d1jt6a1 a.4.1.9 (A:2-72) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=13.29 E-value=29 Score=11.78 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999998
Q gi|254780551|r 190 IPSSIAYNKFIEDSKKFAMQMEGFANEFSAILSRQ 224 (230)
Q Consensus 190 IPa~~~yn~l~~rv~~~~~~le~~a~~~~~~l~r~ 224 (230)
|+--.+|+||.+|-+-+..-++....++.+.+..+
T Consensus 33 vs~~~~y~~F~~K~~L~~~~~~~~~~~~~~~~~~~ 67 (71)
T d1jt6a1 33 SSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKE 67 (71)
T ss_dssp CCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 58759988884999999999999999999999996
Done!