RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus
Liberibacter asiaticus str. psy62]
         (230 letters)



>gnl|CDD|31153 COG0811, TolQ, Biopolymer transport proteins [Intracellular
           trafficking and secretion].
          Length = 216

 Score =  132 bits (334), Expect = 6e-32
 Identities = 68/215 (31%), Positives = 113/215 (52%), Gaps = 3/215 (1%)

Query: 16  LFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKS 75
           LF+Q  + VK ++ LL + S++SW +++ K +       +   FE+ FWSG+SLE     
Sbjct: 1   LFLQADIVVKLVMILLLLGSVVSWPLLLLKILALALAGERLSLFEKRFWSGRSLEDAVLK 60

Query: 76  LKN--HHNIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLS 133
           L         L  IF SA++E ++    G +    +++R  R ++ AIARE   +   L+
Sbjct: 61  LAESRDPLSALELIFASAINELRRIERAGLKLGAPLKERARRALEEAIAREERRLERGLT 120

Query: 134 FLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSI-PGIIESLISILLGLCVSIPS 192
            L ++ S    +G+LG V G+M  F  I      ++  + PGI E+LI+  +GL V+IP+
Sbjct: 121 LLATIGSIAPFLGLLGTVWGIMPAFIGIGAGGGADLAVVAPGISEALIATAIGLFVAIPA 180

Query: 193 SIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227
            +AYN      ++   ++E FA E   IL RQ + 
Sbjct: 181 VVAYNVLRRKVEELLAKLEDFAEELELILRRQYDT 215


>gnl|CDD|144995 pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family.  This
           family groups together integral membrane proteins that
           appear to be involved translocation of proteins across a
           membrane. These proteins are probably proton channels.
           MotA is an essential component of the flageller motor
           that uses a proton gradient to generate rotational
           motion in the flageller. ExbB is part of the
           TonB-dependent transduction complex. The TonB complex
           uses the proton gradient across the inner bacterial
           membrane to transport large molecules across the outer
           bacterial membrane.
          Length = 139

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 74  KSLKNHHNIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLS 133
           + L     +     F+S +        +         + +   ++ A+  EL ++   L+
Sbjct: 2   EPLSAIEILAQLG-FLSFVRLGLAPLIERGAFK----EFLRLALEEALDAELRKLERGLT 56

Query: 134 FLGSMSSAGLLVGILGAVLGMMGFFQSIA--GYYSNNVVSIPGIIESLISILLGLCVSIP 191
            L ++ S    +G+LG V G++  F  I   G     VV+ PGI E+L++  LGL V+IP
Sbjct: 57  ILATIGSVAPFLGLLGTVWGIIHAFIHIGQTGQADPAVVA-PGISEALVATALGLFVAIP 115

Query: 192 SSIAYNKF 199
           + +AYN  
Sbjct: 116 ALLAYNVL 123


>gnl|CDD|31833 COG1647, COG1647, Esterase/lipase [General function prediction
           only].
          Length = 243

 Score = 32.5 bits (74), Expect = 0.089
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 13  IFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETV 72
           +FAL +      K I+ +    ++ SW +II+     +   R  +++E     G+  E +
Sbjct: 97  VFALKLAYHYPPKKIVPMCAPVNVKSWRIIIE---GLLEYFRNAKKYE-----GKDQEQI 148

Query: 73  CKSLKNHHN--IGLAAIFMSAMSEWKKSCDKGARSPIGI-QDRIDRMMDVAIA 122
            K +K++ +  +   A     + + ++S DK   SP  + Q R D M+    A
Sbjct: 149 DKEMKSYKDTPMTTTAQLKKLIKDARRSLDK-IYSPTLVVQGRQDEMVPAESA 200


>gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
           structure and biogenesis].
          Length = 933

 Score = 28.2 bits (63), Expect = 1.7
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 158 FQSIAGYYSNNVVSIPGI------IESLISILLGLCVSIPSSIAYNKFIEDSKKFAM-QM 210
           ++++ GY    V  +PG       IE  +   LG+      S    +F E  ++FA+ Q+
Sbjct: 81  YKTMQGYD---VPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQV 137

Query: 211 EGFANEF 217
           +    +F
Sbjct: 138 DEQKEQF 144


>gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose
           pyrophosphorylase/mannose-1-phosphate
           guanylyltransferase [Cell wall/membrane/envelope
           biogenesis].
          Length = 371

 Score = 26.7 bits (59), Expect = 5.2
 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)

Query: 92  MSEWKKSCDKGARSPIGIQDRIDRMM----DVAIAREL 125
                 S   G   PIGI  RID+      +V +A E 
Sbjct: 310 THSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADED 347


>gnl|CDD|33704 COG3918, COG3918, Predicted membrane protein [Function unknown].
          Length = 153

 Score = 26.5 bits (58), Expect = 6.4
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 136 GSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIP-GIIESLISILLGLCV 188
           G     GL+ G++GAV+G MG  Q+     +     +P  ++E  +++L G  +
Sbjct: 95  GGYRWGGLIAGVIGAVIGTMGGAQARTRLAAAFGHDLPAALLEDAVAVLGGFLI 148


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0785    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,700,196
Number of extensions: 142760
Number of successful extensions: 772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 65
Length of query: 230
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 139
Effective length of database: 4,297,318
Effective search space: 597327202
Effective search space used: 597327202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)