RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus Liberibacter asiaticus str. psy62] (230 letters) >gnl|CDD|31153 COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]. Length = 216 Score = 132 bits (334), Expect = 6e-32 Identities = 68/215 (31%), Positives = 113/215 (52%), Gaps = 3/215 (1%) Query: 16 LFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETVCKS 75 LF+Q + VK ++ LL + S++SW +++ K + + FE+ FWSG+SLE Sbjct: 1 LFLQADIVVKLVMILLLLGSVVSWPLLLLKILALALAGERLSLFEKRFWSGRSLEDAVLK 60 Query: 76 LKN--HHNIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLS 133 L L IF SA++E ++ G + +++R R ++ AIARE + L+ Sbjct: 61 LAESRDPLSALELIFASAINELRRIERAGLKLGAPLKERARRALEEAIAREERRLERGLT 120 Query: 134 FLGSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSI-PGIIESLISILLGLCVSIPS 192 L ++ S +G+LG V G+M F I ++ + PGI E+LI+ +GL V+IP+ Sbjct: 121 LLATIGSIAPFLGLLGTVWGIMPAFIGIGAGGGADLAVVAPGISEALIATAIGLFVAIPA 180 Query: 193 SIAYNKFIEDSKKFAMQMEGFANEFSAILSRQTEG 227 +AYN ++ ++E FA E IL RQ + Sbjct: 181 VVAYNVLRRKVEELLAKLEDFAEELELILRRQYDT 215 >gnl|CDD|144995 pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family. This family groups together integral membrane proteins that appear to be involved translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flageller motor that uses a proton gradient to generate rotational motion in the flageller. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane. Length = 139 Score = 59.6 bits (145), Expect = 8e-10 Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 8/128 (6%) Query: 74 KSLKNHHNIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLS 133 + L + F+S + + + + ++ A+ EL ++ L+ Sbjct: 2 EPLSAIEILAQLG-FLSFVRLGLAPLIERGAFK----EFLRLALEEALDAELRKLERGLT 56 Query: 134 FLGSMSSAGLLVGILGAVLGMMGFFQSIA--GYYSNNVVSIPGIIESLISILLGLCVSIP 191 L ++ S +G+LG V G++ F I G VV+ PGI E+L++ LGL V+IP Sbjct: 57 ILATIGSVAPFLGLLGTVWGIIHAFIHIGQTGQADPAVVA-PGISEALVATALGLFVAIP 115 Query: 192 SSIAYNKF 199 + +AYN Sbjct: 116 ALLAYNVL 123 >gnl|CDD|31833 COG1647, COG1647, Esterase/lipase [General function prediction only]. Length = 243 Score = 32.5 bits (74), Expect = 0.089 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 13 IFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFEQLFWSGQSLETV 72 +FAL + K I+ + ++ SW +II+ + R +++E G+ E + Sbjct: 97 VFALKLAYHYPPKKIVPMCAPVNVKSWRIIIE---GLLEYFRNAKKYE-----GKDQEQI 148 Query: 73 CKSLKNHHN--IGLAAIFMSAMSEWKKSCDKGARSPIGI-QDRIDRMMDVAIA 122 K +K++ + + A + + ++S DK SP + Q R D M+ A Sbjct: 149 DKEMKSYKDTPMTTTAQLKKLIKDARRSLDK-IYSPTLVVQGRQDEMVPAESA 200 >gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 933 Score = 28.2 bits (63), Expect = 1.7 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 10/67 (14%) Query: 158 FQSIAGYYSNNVVSIPGI------IESLISILLGLCVSIPSSIAYNKFIEDSKKFAM-QM 210 ++++ GY V +PG IE + LG+ S +F E ++FA+ Q+ Sbjct: 81 YKTMQGYD---VPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQV 137 Query: 211 EGFANEF 217 + +F Sbjct: 138 DEQKEQF 144 >gnl|CDD|36536 KOG1322, KOG1322, KOG1322, GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]. Length = 371 Score = 26.7 bits (59), Expect = 5.2 Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%) Query: 92 MSEWKKSCDKGARSPIGIQDRIDRMM----DVAIAREL 125 S G PIGI RID+ +V +A E Sbjct: 310 THSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADED 347 >gnl|CDD|33704 COG3918, COG3918, Predicted membrane protein [Function unknown]. Length = 153 Score = 26.5 bits (58), Expect = 6.4 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 136 GSMSSAGLLVGILGAVLGMMGFFQSIAGYYSNNVVSIP-GIIESLISILLGLCV 188 G GL+ G++GAV+G MG Q+ + +P ++E +++L G + Sbjct: 95 GGYRWGGLIAGVIGAVIGTMGGAQARTRLAAAFGHDLPAALLEDAVAVLGGFLI 148 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.325 0.138 0.394 Gapped Lambda K H 0.267 0.0785 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,700,196 Number of extensions: 142760 Number of successful extensions: 772 Number of sequences better than 10.0: 1 Number of HSP's gapped: 767 Number of HSP's successfully gapped: 65 Length of query: 230 Length of database: 6,263,737 Length adjustment: 91 Effective length of query: 139 Effective length of database: 4,297,318 Effective search space: 597327202 Effective search space used: 597327202 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.2 bits)