RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780551|ref|YP_003064964.1| tolQ protein [Candidatus
Liberibacter asiaticus str. psy62]
         (230 letters)



>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
           isozyme IV [TaxId: 9606]}
          Length = 262

 Score = 25.6 bits (55), Expect = 3.8
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 93  SEWKKSCDKGARSPIGIQDR 112
            +W  +C K  +SPI I   
Sbjct: 18  VKWGGNCQKDRQSPINIVTT 37


>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 361

 Score = 25.6 bits (56), Expect = 4.1
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 81  NIGLAAIFMSAMSEWKKSCDKGARSPIGIQDRIDRMMDVAIARELEEITEKLSFLGSMSS 140
           N G A   ++AM E K              D           R L   T  L +  ++ S
Sbjct: 50  NFGRAVQQVNAMIEKKLEPLSQ--------DEDQHADLTQSRRPLTSCTIFLGYTSNLIS 101

Query: 141 AGL 143
           +G+
Sbjct: 102 SGI 104


>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId:
           562]}
          Length = 416

 Score = 24.6 bits (53), Expect = 7.9
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 3/125 (2%)

Query: 1   MNNYGLAIMDISIFALFMQMGLAVKCIITLLFIFSILSWSVIIQKSVNFITLRRQFREFE 60
            N       D S++     +   V+ I         + WS  I+               +
Sbjct: 98  ANLAASMYPDQSLYPA-NSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVAD 156

Query: 61  QLFWSGQSLETVCKSLKNHHNIGLAAIFMSAMSEWKKSC-DKGARSPIGIQDRIDRMMDV 119
                G  L    + +K     G AA+         K C   G +  +  Q+ I +++  
Sbjct: 157 AEAGFGGVLN-AFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAA 215

Query: 120 AIARE 124
            +  +
Sbjct: 216 RLCAD 220


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.394 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 804,797
Number of extensions: 35962
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 12
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)