HHsearch alignment for GI: 254780552 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.79 E-value=1.5e-18 Score=132.91 Aligned_cols=182 Identities=25% Similarity=0.316 Sum_probs=97.5
Q ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCC-CCC
Q ss_conf 78987782397999999999999866146776707997378855778999999861----------8985312576-443
Q gi|254780552|r 23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGP-VIA 91 (334)
Q Consensus 23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~-~~~ 91 (334)
T Consensus 174 ~~GklDpvIGRd~EI~r~i~IL-~RR~KN----NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~A 248 (823)
T CHL00095 174 YEGNLDPVIGRDKEIERVIQIL-GRRTKN----NPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLA 248 (823)
T ss_pred HHCCCCCCCCCHHHHHHHHHHH-HHHCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHH
T ss_conf 8389998759569999999999-773248----85023799987999999999976088998687599368842887753
Q ss_pred C---HHH----HHHHHHHH--HCCCHHHHHHHHHC--------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 3---467----66666641--01637888757616--------9899999999863475100256787652000466740
Q gi|254780552|r 92 K---AGD----LAALLTNL--EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF 154 (334)
Q Consensus 92 ~---~~d----l~~~~~~~--~~~~vlfiDEihrl--------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f 154 (334)
T Consensus 249 GtkyRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel-------------------- 308 (823)
T CHL00095 249 GTKYRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKL-------------------- 308 (823)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCC--------------------
T ss_conf 342226799999999999985798699973516532889766643178876578648986--------------------
Q ss_pred EEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------CCCH
Q ss_conf 0552045543--3---5545442012067326454799999877765----4121011111112332022------1015
Q gi|254780552|r 155 TLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------RGTP 219 (334)
Q Consensus 155 ~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------~Gd~ 219 (334)
T Consensus 309 ~~IGATT~~EYrk~iEkD~AL~RRFq~V-~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LP 387 (823)
T CHL00095 309 QCIGATTLEEYRKHIEKDPALERRFQPV-YVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLP 387 (823)
T ss_pred EEEEECCHHHHHHHHHCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 6997078899999853058899626841-028998799999999999999875088504789999999877640377782
Q ss_pred HHHHHHHHHHH
Q ss_conf 67887775433
Q gi|254780552|r 220 RIAGRLLRRVR 230 (334)
Q Consensus 220 R~AlnlLe~v~ 230 (334)
T Consensus 388 DKAIDllDeA~ 398 (823)
T CHL00095 388 DKAIDLLDEAG 398 (823)
T ss_pred HHHHHHHHHHH
T ss_conf 17888899998