HHsearch alignment for GI: 254780552 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.79  E-value=1.5e-18  Score=132.91  Aligned_cols=182  Identities=25%  Similarity=0.316  Sum_probs=97.5

Q ss_pred             CCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----------CCCCCCCCCC-CCC
Q ss_conf             78987782397999999999999866146776707997378855778999999861----------8985312576-443
Q gi|254780552|r   23 RPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----------GVNFRSTSGP-VIA   91 (334)
Q Consensus        23 RP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----------~~~~~~~s~~-~~~   91 (334)
T Consensus       174 ~~GklDpvIGRd~EI~r~i~IL-~RR~KN----NpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~A  248 (823)
T CHL00095        174 YEGNLDPVIGRDKEIERVIQIL-GRRTKN----NPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLA  248 (823)
T ss_pred             HHCCCCCCCCCHHHHHHHHHHH-HHHCCC----CCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHH
T ss_conf             8389998759569999999999-773248----85023799987999999999976088998687599368842887753


Q ss_pred             C---HHH----HHHHHHHH--HCCCHHHHHHHHHC--------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf             3---467----66666641--01637888757616--------9899999999863475100256787652000466740
Q gi|254780552|r   92 K---AGD----LAALLTNL--EDRDVLFIDEIHRL--------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRF  154 (334)
Q Consensus        92 ~---~~d----l~~~~~~~--~~~~vlfiDEihrl--------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f  154 (334)
T Consensus       249 GtkyRGeFEeRlk~il~ei~~~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel--------------------  308 (823)
T CHL00095        249 GTKYRGEFEERIKKIMDEIKKANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKL--------------------  308 (823)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCC--------------------
T ss_conf             342226799999999999985798699973516532889766643178876578648986--------------------


Q ss_pred             EEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHHH----HHCCCHHHHHHHHHHHCCC------CCCH
Q ss_conf             0552045543--3---5545442012067326454799999877765----4121011111112332022------1015
Q gi|254780552|r  155 TLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA----KLTGLAVTDEAACEIAMRS------RGTP  219 (334)
Q Consensus       155 ~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~~----~~~~i~~~~~al~~ia~~s------~Gd~  219 (334)
T Consensus       309 ~~IGATT~~EYrk~iEkD~AL~RRFq~V-~V~EPs~e~t~~IL~gl~~~yE~~H~V~i~d~Ai~aav~LS~RYi~dr~LP  387 (823)
T CHL00095        309 QCIGATTLEEYRKHIEKDPALERRFQPV-YVGEPSVEETIEILLGLRDRYEKHHNLSISDKALEAAAKLSDQYIKDRFLP  387 (823)
T ss_pred             EEEEECCHHHHHHHHHCCHHHHHHCCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             6997078899999853058899626841-028998799999999999999875088504789999999877640377782


Q ss_pred             HHHHHHHHHHH
Q ss_conf             67887775433
Q gi|254780552|r  220 RIAGRLLRRVR  230 (334)
Q Consensus       220 R~AlnlLe~v~  230 (334)
T Consensus       388 DKAIDllDeA~  398 (823)
T CHL00095        388 DKAIDLLDEAG  398 (823)
T ss_pred             HHHHHHHHHHH
T ss_conf             17888899998