HHsearch alignment for GI: 254780552 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.70 E-value=1.6e-15 Score=114.36 Aligned_cols=192 Identities=22% Similarity=0.267 Sum_probs=123.6
Q ss_pred HHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHC-C--CCCCCCCCCCCCCH---HHH-
Q ss_conf 782397999999999999866----146776707997378855778999999861-8--98531257644334---676-
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVAREL-G--VNFRSTSGPVIAKA---GDL- 96 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~--~~~~~~s~~~~~~~---~dl- 96 (334)
T Consensus 509 ~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLI 588 (823)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLI 588 (823)
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHC
T ss_conf 78407699999999999999708998999746899878998877999999999974782025885351015542076745
Q ss_pred -----------HHHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf -----------6666641---01637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 97 -----------AALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 97 -----------~~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
T Consensus 589 GaPPGYVGy~eGG~LTeaVrr~PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~G-------r~vdF~N-tIIImTSN 660 (823)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKG-------RTIDFKN-TLIIMTSN 660 (823)
T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCC-------CEEECEE-EEEEECCC
T ss_conf 899876677878820198871998699862131138899998876516884348999-------9884310-39997165
Q ss_pred CC----------------------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH----
Q ss_conf 43----------------------------------------3554544201206732645479999987776541----
Q gi|254780552|r 163 VG----------------------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL---- 198 (334)
Q Consensus 163 ~~----------------------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~---- 198 (334)
T Consensus 661 lGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~r 740 (823)
T CHL00095 661 LGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKR 740 (823)
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 05588874134434333445432202358999999999998437987873278278618999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHHCCCC---CCHHHHHHHHH
Q ss_conf -----210111111123320221---01567887775
Q gi|254780552|r 199 -----TGLAVTDEAACEIAMRSR---GTPRIAGRLLR 227 (334)
Q Consensus 199 -----~~i~~~~~al~~ia~~s~---Gd~R~AlnlLe 227 (334)
T Consensus 741 l~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~ 777 (823)
T CHL00095 741 LNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIM 777 (823)
T ss_pred HHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 9968985998889999999958797768136889999