HHsearch alignment for GI: 254780552 and conserved domain: CHL00095

>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.70  E-value=1.6e-15  Score=114.36  Aligned_cols=192  Identities=22%  Similarity=0.267  Sum_probs=123.6

Q ss_pred             HHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHC-C--CCCCCCCCCCCCCH---HHH-
Q ss_conf             782397999999999999866----146776707997378855778999999861-8--98531257644334---676-
Q gi|254780552|r   28 EEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVAREL-G--VNFRSTSGPVIAKA---GDL-   96 (334)
Q Consensus        28 ~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~--~~~~~~s~~~~~~~---~dl-   96 (334)
T Consensus       509 ~~ViGQd~AI~~vs~ai~rsraGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~hsvsrLI  588 (823)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEKHTVSKLI  588 (823)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHC
T ss_conf             78407699999999999999708998999746899878998877999999999974782025885351015542076745


Q ss_pred             -----------HHHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf             -----------6666641---01637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r   97 -----------AALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR  162 (334)
Q Consensus        97 -----------~~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~  162 (334)
T Consensus       589 GaPPGYVGy~eGG~LTeaVrr~PysVvLfDEIEKAHpdV~nilLQvlDdG~LtD~~G-------r~vdF~N-tIIImTSN  660 (823)
T CHL00095        589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKG-------RTIDFKN-TLIIMTSN  660 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCC-------CEEECEE-EEEEECCC
T ss_conf             899876677878820198871998699862131138899998876516884348999-------9884310-39997165


Q ss_pred             CC----------------------------------------CCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH----
Q ss_conf             43----------------------------------------3554544201206732645479999987776541----
Q gi|254780552|r  163 VG----------------------------------------LLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL----  198 (334)
Q Consensus       163 ~~----------------------------------------~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~----  198 (334)
T Consensus       661 lGs~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFlnRiDeii~F~~L~~~~l~~Iv~~~l~~l~~r  740 (823)
T CHL00095        661 LGSKVIEKGGGSLGFKLLEDGTKLDEKQYKRLSNLVNEELKQYFRPEFLNRLDEIIVFRPLTKDEVWEIAEIMLKELFKR  740 (823)
T ss_pred             CCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf             05588874134434333445432202358999999999998437987873278278618999999999999999999999


Q ss_pred             -----CCCHHHHHHHHHHHCCCC---CCHHHHHHHHH
Q ss_conf             -----210111111123320221---01567887775
Q gi|254780552|r  199 -----TGLAVTDEAACEIAMRSR---GTPRIAGRLLR  227 (334)
Q Consensus       199 -----~~i~~~~~al~~ia~~s~---Gd~R~AlnlLe  227 (334)
T Consensus       741 l~~~~i~l~~~~~a~~~l~~~gy~~~~GARpl~R~I~  777 (823)
T CHL00095        741 LNNQGIQLEVDERFKTLLAKEGYNPLYGARPLRRAIM  777 (823)
T ss_pred             HHHCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             9968985998889999999958797768136889999