HHsearch alignment for GI: 254780552 and conserved domain: COG0542
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].
Probab=99.76 E-value=1.7e-17 Score=126.52 Aligned_cols=192 Identities=24% Similarity=0.276 Sum_probs=112.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHH----CCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCC---HH---
Q ss_conf 7823979999999999998661----467767079973788557789999998618---9853125764433---46---
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAKA----RAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAK---AG--- 94 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~~----~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~---~~--- 94 (334)
T Consensus 491 ~rViGQd~AV~~v~~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLI 570 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLI 570 (786)
T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHH
T ss_conf 65017399999999999998569999998735788667886569999999999965997444554568777787799872
Q ss_pred ---------HHHHHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf ---------766666641---01637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 95 ---------DLAALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 95 ---------dl~~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
T Consensus 571 GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD-------~~Gr~VdFrN-tiIImTSN 642 (786)
T COG0542 571 GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTD-------GQGRTVDFRN-TIIIMTSN 642 (786)
T ss_pred CCCCCCCEECCCCCHHHHHHCCCCEEEEECHHHHCCHHHHHHHHHHHCCCCEEC-------CCCCEEECCE-EEEEEECC
T ss_conf 799987200655400376606998688841264408899999999846780554-------8998884300-28998450
Q ss_pred C----------------------------CC-CCHHHHHCCCCEEECCCCCHHHHHHHHHHHHH---------HCCCHHH
Q ss_conf 4----------------------------33-55454420120673264547999998777654---------1210111
Q gi|254780552|r 163 V----------------------------GL-LTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAK---------LTGLAVT 204 (334)
Q Consensus 163 ~----------------------------~~-l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~---------~~~i~~~ 204 (334)
T Consensus 643 ~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s 722 (786)
T COG0542 643 AGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELS 722 (786)
T ss_pred CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 26598975313432100467889999999853899898512617850679989999999999999999998689559988
Q ss_pred HHHHHHHHCCCC---CCHHHHHHHHH
Q ss_conf 111123320221---01567887775
Q gi|254780552|r 205 DEAACEIAMRSR---GTPRIAGRLLR 227 (334)
Q Consensus 205 ~~al~~ia~~s~---Gd~R~AlnlLe 227 (334)
T Consensus 723 ~~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 723 DEAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 89999999964687767367999999