HHsearch alignment for GI: 254780552 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=96.20 E-value=0.043 Score=32.32 Aligned_cols=150 Identities=24% Similarity=0.382 Sum_probs=76.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH-HH-CCC------------------------
Q ss_conf 7782397999999999999866146776707997378855778999999-86-189------------------------
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVA-RE-LGV------------------------ 80 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA-~~-l~~------------------------ 80 (334)
T Consensus 593 yeET~DQl~AI~eVk~DM~~----~kpMD-RLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF 667 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMES----GKPMD-RLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERF 667 (1139)
T ss_pred CCCCHHHHHHHHHHHHHHCC----CCCCH-HEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 85787899999999988606----98661-02565768759999999999986379749999260786899899999873
Q ss_pred ---CC--CCCCCCCCCCHHHHHHHHHHHHCC---------------------CHHHHHHHHHCCHHHHHHHHHHHHCCCC
Q ss_conf ---85--312576443346766666641016---------------------3788875761698999999998634751
Q gi|254780552|r 81 ---NF--RSTSGPVIAKAGDLAALLTNLEDR---------------------DVLFIDEIHRLSIIVEEILYPAMEDFQL 134 (334)
Q Consensus 81 ---~~--~~~s~~~~~~~~dl~~~~~~~~~~---------------------~vlfiDEihrl~~~~q~~Ll~~mE~~~i 134 (334)
T Consensus 668 ~~fPV~I~~LS--RF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~L-r-~~V 743 (1139)
T COG1197 668 AGFPVRIEVLS--RFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVKHKEKLKEL-R-ANV 743 (1139)
T ss_pred CCCCEEEEEEC--CCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCEEECCCEEEEECHHHCCCCHHHHHHHH-H-CCC
T ss_conf 38982588860--5578899999999985698458996317647896770476489744353271178999877-5-057
Q ss_pred CCC-CCCCCCCCEEECCCC---CCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 002-567876520004667---400552045543355454420120673264547999998777
Q gi|254780552|r 135 DLM-VGEGPSARSVKINLS---RFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQR 194 (334)
Q Consensus 135 ~i~-~~~~~~a~~~~~~~~---~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~ 194 (334)
T Consensus 744 DvLTLSATPIPRTL~Msm~GiRdlSv---------I~TPP~~R~pV~T~V~~~d~~~ireAI~R 798 (1139)
T COG1197 744 DVLTLSATPIPRTLNMSLSGIRDLSV---------IATPPEDRLPVKTFVSEYDDLLIREAILR 798 (1139)
T ss_pred CEEEEECCCCCCHHHHHHHCCHHHHH---------CCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 28974178875447777744303311---------14799877212888715882899999999