HHsearch alignment for GI: 254780552 and conserved domain: COG1219

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.67  E-value=2e-16  Score=120.01  Aligned_cols=203  Identities=26%  Similarity=0.388  Sum_probs=128.9

Q ss_pred             CHHHH-CCHHHHHHHHHHHHHHHHHC-------C---CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             87782-39799999999999986614-------6---7767079973788557789999998618985312576443346
Q gi|254780552|r   26 TLEEF-TGQVEACSNLKVFIEAAKAR-------A---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG   94 (334)
Q Consensus        26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~-------~---~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~   94 (334)
T Consensus        58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG  137 (408)
T COG1219          58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG  137 (408)
T ss_pred             HHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCC
T ss_conf             86524326254310346641068899860488776353203179988899757799999999848984751444121066


Q ss_pred             ----HHHHHHH----HH------HCCCHHHHHHHHHCCHH--------------HHHHHHHHHHCCCCCCCC--C-CCCC
Q ss_conf             ----7666666----41------01637888757616989--------------999999986347510025--6-7876
Q gi|254780552|r   95 ----DLAALLT----NL------EDRDVLFIDEIHRLSII--------------VEEILYPAMEDFQLDLMV--G-EGPS  143 (334)
Q Consensus        95 ----dl~~~~~----~~------~~~~vlfiDEihrl~~~--------------~q~~Ll~~mE~~~i~i~~--~-~~~~  143 (334)
T Consensus       138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~  217 (408)
T COG1219         138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQ  217 (408)
T ss_pred             CCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf             35500899999999876458888828859985102542057898723436735899999999707510239998887984


Q ss_pred             CCEEECCCCCCEEEE--CC-------------------C------------------CCC-----CCCHHHHHCCCCEEE
Q ss_conf             520004667400552--04-------------------5------------------543-----355454420120673
Q gi|254780552|r  144 ARSVKINLSRFTLIA--AT-------------------T------------------RVG-----LLTNPLQDRFGIPIR  179 (334)
Q Consensus       144 a~~~~~~~~~f~lI~--AT-------------------t------------------~~~-----~l~~~l~sR~~~~~~  179 (334)
T Consensus       218 Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~  297 (408)
T COG1219         218 QEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIAT  297 (408)
T ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEE
T ss_conf             20488737634678244010399999986268742456644534444128899875486878870883887266632646


Q ss_pred             CCCCCHHHHHHHHHH-----------HHHHCC--CHHHHHHHHHHHCCC--CC-CHHHHHHHHHH
Q ss_conf             264547999998777-----------654121--011111112332022--10-15678877754
Q gi|254780552|r  180 LNFYEIEDLKTIVQR-----------GAKLTG--LAVTDEAACEIAMRS--RG-TPRIAGRLLRR  228 (334)
Q Consensus       180 ~~~~~~~el~~il~~-----------~~~~~~--i~~~~~al~~ia~~s--~G-d~R~AlnlLe~  228 (334)
T Consensus       298 L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~  362 (408)
T COG1219         298 LEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEE  362 (408)
T ss_pred             HHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             10159999999972651789999999964469169974899999999999843353579999999