HHsearch alignment for GI: 254780552 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.67 E-value=2e-16 Score=120.01 Aligned_cols=203 Identities=26% Similarity=0.388 Sum_probs=128.9
Q ss_pred CHHHH-CCHHHHHHHHHHHHHHHHHC-------C---CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 87782-39799999999999986614-------6---7767079973788557789999998618985312576443346
Q gi|254780552|r 26 TLEEF-TGQVEACSNLKVFIEAAKAR-------A---EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKAG 94 (334)
Q Consensus 26 ~l~dv-iGQ~~~~~~l~~~i~a~~~~-------~---~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~~ 94 (334)
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCC
T ss_conf 86524326254310346641068899860488776353203179988899757799999999848984751444121066
Q ss_pred ----HHHHHHH----HH------HCCCHHHHHHHHHCCHH--------------HHHHHHHHHHCCCCCCCC--C-CCCC
Q ss_conf ----7666666----41------01637888757616989--------------999999986347510025--6-7876
Q gi|254780552|r 95 ----DLAALLT----NL------EDRDVLFIDEIHRLSII--------------VEEILYPAMEDFQLDLMV--G-EGPS 143 (334)
Q Consensus 95 ----dl~~~~~----~~------~~~~vlfiDEihrl~~~--------------~q~~Ll~~mE~~~i~i~~--~-~~~~ 143 (334)
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~ 217 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQ 217 (408)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCC
T ss_conf 35500899999999876458888828859985102542057898723436735899999999707510239998887984
Q ss_pred CCEEECCCCCCEEEE--CC-------------------C------------------CCC-----CCCHHHHHCCCCEEE
Q ss_conf 520004667400552--04-------------------5------------------543-----355454420120673
Q gi|254780552|r 144 ARSVKINLSRFTLIA--AT-------------------T------------------RVG-----LLTNPLQDRFGIPIR 179 (334)
Q Consensus 144 a~~~~~~~~~f~lI~--AT-------------------t------------------~~~-----~l~~~l~sR~~~~~~ 179 (334)
T Consensus 218 Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~ 297 (408)
T COG1219 218 QEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIAT 297 (408)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEE
T ss_conf 20488737634678244010399999986268742456644534444128899875486878870883887266632646
Q ss_pred CCCCCHHHHHHHHHH-----------HHHHCC--CHHHHHHHHHHHCCC--CC-CHHHHHHHHHH
Q ss_conf 264547999998777-----------654121--011111112332022--10-15678877754
Q gi|254780552|r 180 LNFYEIEDLKTIVQR-----------GAKLTG--LAVTDEAACEIAMRS--RG-TPRIAGRLLRR 228 (334)
Q Consensus 180 ~~~~~~~el~~il~~-----------~~~~~~--i~~~~~al~~ia~~s--~G-d~R~AlnlLe~ 228 (334)
T Consensus 298 L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~ 362 (408)
T COG1219 298 LEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEE 362 (408)
T ss_pred HHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 10159999999972651789999999964469169974899999999999843353579999999