HHsearch alignment for GI: 254780552 and conserved domain: COG1221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms].
Probab=99.53 E-value=1.7e-13 Score=101.98 Aligned_cols=202 Identities=24% Similarity=0.274 Sum_probs=127.1
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHH----CCCCCCCCCCCCCCC-HHH-
Q ss_conf 07898778239799999999999986614677670799737885577899999986----189853125764433-467-
Q gi|254780552|r 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARE----LGVNFRSTSGPVIAK-AGD- 95 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~----l~~~~~~~s~~~~~~-~~d- 95 (334)
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~---~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~ 148 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPS---GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA 148 (403)
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHCCC---CCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCHHHH
T ss_conf 02215666635688899999999861899---984798668875388999999986121358987997777737677777
Q ss_pred ----------------HHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEEC
Q ss_conf ----------------6666664101637888757616989999999986347510025678765200046674005520
Q gi|254780552|r 96 ----------------LAALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAA 159 (334)
Q Consensus 96 ----------------l~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~A 159 (334)
T Consensus 149 eLFG~~kGaftGa~~~k~Glfe~A-~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~----~~---~dVRli~A 220 (403)
T COG1221 149 ELFGHEKGAFTGAQGGKAGLFEQA-NGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQP----RP---VDVRLICA 220 (403)
T ss_pred HHHCCCCCEEECCCCCCCCHHEEC-CCCEEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCC----CC---CCCEEEEC
T ss_conf 773200000025667867642052-79777656365379858999999987186576688888----67---77404513
Q ss_pred CCCCC--CCCH--HHHH-CCCCEEECCCCCH--HHHHH----HHHHHHHHCCCHH---HHHHHHHHHC-CCCCCHHHHHH
Q ss_conf 45543--3554--5442-0120673264547--99999----8777654121011---1111123320-22101567887
Q gi|254780552|r 160 TTRVG--LLTN--PLQD-RFGIPIRLNFYEI--EDLKT----IVQRGAKLTGLAV---TDEAACEIAM-RSRGTPRIAGR 224 (334)
Q Consensus 160 Tt~~~--~l~~--~l~s-R~~~~~~~~~~~~--~el~~----il~~~~~~~~i~~---~~~al~~ia~-~s~Gd~R~Aln 224 (334)
T Consensus 221 T~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN 300 (403)
T COG1221 221 TTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKN 300 (403)
T ss_pred CCCCHHHHHHHHCCHHHHHCCCEECCCCHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
T ss_conf 56687999874052556416754318972435555999999999999997399988888999999984889983999999
Q ss_pred HHHHHHHHHH
Q ss_conf 7754333455
Q gi|254780552|r 225 LLRRVRDFAE 234 (334)
Q Consensus 225 lLe~v~d~a~ 234 (334)
T Consensus 301 ~Ve~~~~~~~ 310 (403)
T COG1221 301 LVERAVAQAS 310 (403)
T ss_pred HHHHHHHHHC
T ss_conf 9999999735