HHsearch alignment for GI: 254780552 and conserved domain: COG1241
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair].
Probab=99.04 E-value=1.5e-09 Score=78.00 Aligned_cols=219 Identities=22% Similarity=0.262 Sum_probs=123.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHH---------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCCC
Q ss_conf 77823979999999999998661---------46776707997378855778999999861898531257-----64433
Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAKA---------RAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSG-----PVIAK 92 (334)
Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~~---------~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~-----~~~~~ 92 (334)
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGD--InILLvGDPgtaKSqlLk~v~~~aPr~v-ytsgkgss~~GLTA 361 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGD--IHILLVGDPGTAKSQLLKYVAKLAPRGV-YTSGKGSSAAGLTA 361 (682)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC--EEEEECCCCCHHHHHHHHHHHHHCCCEE-EECCCCCCCCCCEE
T ss_conf 15103819999999999608976647998620242--2699817982519999999886488407-97264125457306
Q ss_pred --HHHH--------HHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCC
Q ss_conf --4676--------666664101637888757616989999999986347510025678765200046674005520455
Q gi|254780552|r 93 --AGDL--------AALLTNLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTR 162 (334)
Q Consensus 93 --~~dl--------~~~~~~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~ 162 (334)
T Consensus 362 av~rd~~tge~~LeaGALVl-AD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsI--aKAG---I~atLnARcsvLAAaNP 435 (682)
T COG1241 362 AVVRDKVTGEWVLEAGALVL-ADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISI--AKAG---ITATLNARCSVLAAANP 435 (682)
T ss_pred EEEECCCCCEEEEECCEEEE-ECCCEEEEEECCCCCHHHHHHHHHHHHHCEEEE--CCCC---EEEECCHHHHHHHHHCC
T ss_conf 99970677607886777999-249779997056777678999999987527512--0554---25411144445665188
Q ss_pred CC-------------CCCHHHHHCCCCEEECCC-CCHH---HHHH-H----------------------------HHHH-
Q ss_conf 43-------------355454420120673264-5479---9999-8----------------------------7776-
Q gi|254780552|r 163 VG-------------LLTNPLQDRFGIPIRLNF-YEIE---DLKT-I----------------------------VQRG- 195 (334)
Q Consensus 163 ~~-------------~l~~~l~sR~~~~~~~~~-~~~~---el~~-i----------------------------l~~~- 195 (334)
T Consensus 436 ~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI 515 (682)
T COG1241 436 KFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYI 515 (682)
T ss_pred CCCCCCCCCCHHHHCCCCHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 77767999997885589835775177547705788853359999999998634565322333322222346589999999
Q ss_pred --HHHC-CCHHHHHHHHHHHCC-----CCC-----------CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf --5412-101111111233202-----210-----------1567887775433345541588642778787654210
Q gi|254780552|r 196 --AKLT-GLAVTDEAACEIAMR-----SRG-----------TPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 196 --~~~~-~i~~~~~al~~ia~~-----s~G-----------d~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 516 ~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 516 SYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 987505896128999999999998765201223456754561999999999999988654447778899999999999