HHsearch alignment for GI: 254780552 and conserved domain: COG2812

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=100.00  E-value=3.9e-44  Score=289.41  Aligned_cols=211  Identities=26%  Similarity=0.349  Sum_probs=175.1

Q ss_pred             HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCC-------------
Q ss_conf             57875078987782397999999999999866146776707-9973788557789999998618985-------------
Q gi|254780552|r   17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNF-------------   82 (334)
Q Consensus        17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~-------------   82 (334)
T Consensus         5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C   79 (515)
T COG2812           5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC   79 (515)
T ss_pred             HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             89988583007776364899999999998084-----2333651377776710499999999568898777722531666


Q ss_pred             CCCC-CC----------CCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             3125-76----------4433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r   83 RSTS-GP----------VIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR  145 (334)
Q Consensus        83 ~~~s-~~----------~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~  145 (334)
T Consensus        80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE--------------  145 (515)
T COG2812          80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE--------------  145 (515)
T ss_pred             HHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCC--------------
T ss_conf             865148864101136444548679999998724688666641899831876437888887511136--------------


Q ss_pred             EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf             00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r  146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL  225 (334)
Q Consensus       146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl  225 (334)
T Consensus       146 ----PP~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalsl  220 (515)
T COG2812         146 ----PPSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSL  220 (515)
T ss_pred             ----CCCCEEEEEECCCCCCCCHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf             ----86674899853886768404552122-0222579999999999999874487547999999999828974567778


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf             754333455415886427787876542100
Q gi|254780552|r  226 LRRVRDFAEVAHAKTITREIADAALLRLAI  255 (334)
Q Consensus       226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~i  255 (334)
T Consensus       221 LD----q~i~~~~~~It~~~v~~~lG~~~~  246 (515)
T COG2812         221 LD----QAIAFGEGEITLESVRDMLGLTDI  246 (515)
T ss_pred             HH----HHHHCCCCCCCHHHHHHHHCCCCH
T ss_conf             99----999706776569999999688778