HHsearch alignment for GI: 254780552 and conserved domain: COG2812
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair].
Probab=100.00 E-value=3.9e-44 Score=289.41 Aligned_cols=211 Identities=26% Similarity=0.349 Sum_probs=175.1
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCC-------------
Q ss_conf 57875078987782397999999999999866146776707-9973788557789999998618985-------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNF------------- 82 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~------------- 82 (334)
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 89988583007776364899999999998084-----2333651377776710499999999568898777722531666
Q ss_pred CCCC-CC----------CCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3125-76----------4433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 83 RSTS-GP----------VIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 83 ~~~s-~~----------~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-------------- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-------------- 145 (515)
T ss_pred HHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCC--------------
T ss_conf 865148864101136444548679999998724688666641899831876437888887511136--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
T Consensus 146 ----PP~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalsl 220 (515)
T COG2812 146 ----PPSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSL 220 (515)
T ss_pred ----CCCCEEEEEECCCCCCCCHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----86674899853886768404552122-0222579999999999999874487547999999999828974567778
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 754333455415886427787876542100
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLAI 255 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~i 255 (334)
T Consensus 221 LD----q~i~~~~~~It~~~v~~~lG~~~~ 246 (515)
T COG2812 221 LD----QAIAFGEGEITLESVRDMLGLTDI 246 (515)
T ss_pred HH----HHHHCCCCCCCHHHHHHHHCCCCH
T ss_conf 99----999706776569999999688778