HHsearch alignment for GI: 254780552 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=99.21 E-value=1.4e-10 Score=84.16 Aligned_cols=190 Identities=24% Similarity=0.327 Sum_probs=127.0
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCH---HHH---
Q ss_conf 87782397999999999999866146776707997378855778999999861---898531257644334---676---
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKA---GDL--- 96 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~---~dl--- 96 (334)
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~---Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAK---SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGH 297 (550)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCC
T ss_conf 445623069999999999998726---89807984588853899999998737555798666312225378888887453
Q ss_pred -HHHHHHH----------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC-
Q ss_conf -6666641----------0163788875761698999999998634751002567876520004667400552045543-
Q gi|254780552|r 97 -AALLTNL----------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG- 164 (334)
Q Consensus 97 -~~~~~~~----------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~- 164 (334)
T Consensus 298 eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRv-G---~~r~ikVD---VRiIAATNRDL~ 370 (550)
T COG3604 298 EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERV-G---GDRTIKVD---VRVIAATNRDLE 370 (550)
T ss_pred CCCCCCCCHHCCCCCEEECCCCEEECHHHCCCCHHHHHHHHHHHHHCCEEEC-C---CCCEEEEE---EEEEECCCHHHH
T ss_conf 3223335101467635655797576022036787788999999863652534-7---99636777---899821353099
Q ss_pred --------------------CCCHHHHHCCCCEEECCCCCHHHH-HHHHHHHHHHCC---CHHHHHHHHHHHCCC-CCCH
Q ss_conf --------------------355454420120673264547999-998777654121---011111112332022-1015
Q gi|254780552|r 165 --------------------LLTNPLQDRFGIPIRLNFYEIEDL-KTIVQRGAKLTG---LAVTDEAACEIAMRS-RGTP 219 (334)
Q Consensus 165 --------------------~l~~~l~sR~~~~~~~~~~~~~el-~~il~~~~~~~~---i~~~~~al~~ia~~s-~Gd~ 219 (334)
T Consensus 371 ~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~--------DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNV 442 (550)
T COG3604 371 EMVRDGEFRADLYYRLSVFPLELPPLRERPE--------DIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNV 442 (550)
T ss_pred HHHHCCCCHHHHHHCCCCCCCCCCCCCCCCC--------CHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCH
T ss_conf 9987495155453210200137898345886--------67999999999998863976403398999999739999719
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 67887775433345
Q gi|254780552|r 220 RIAGRLLRRVRDFA 233 (334)
Q Consensus 220 R~AlnlLe~v~d~a 233 (334)
T Consensus 443 RELen~veRavlla 456 (550)
T COG3604 443 RELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99998999999970