HHsearch alignment for GI: 254780552 and conserved domain: COG5245

Probab=97.04  E-value=0.001  Score=42.22  Aligned_cols=162  Identities=20%  Similarity=0.220  Sum_probs=73.0

Q ss_pred             HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHH-HHHHHHHCCCCCCCCCCCCCC-CHHH
Q ss_conf             78750789877823979999999999998661467767079973788557789-999998618985312576443-3467
Q gi|254780552|r   18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTL-AQVVARELGVNFRSTSGPVIA-KAGD   95 (334)
Q Consensus        18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtl-A~iiA~~l~~~~~~~s~~~~~-~~~d   95 (334)
T Consensus      1464 ~~~vm~~~~--vVipt~dt~~~~~f~n~~ln----t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ 1537 (3164)
T COG5245        1464 GERVMLRKE--VVIPTSDTGFVDSFSNEALN----TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSK 1537 (3164)
T ss_pred             HHHHCCCCC--EECCCCCCHHHHHHHHHHHH----CCCEEEEECCCCCCCCHHCCHHHHHHHHEEEEEEEECCCCCCHHH
T ss_conf             024304677--31245331319989999874----063499978999751011263666543001567751124577889


Q ss_pred             HHHHH------HH----------HHCCCHHHHHHHHHCCHHH----HH---HHHHHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf             66666------64----------1016378887576169899----99---99998634751002567876520004667
Q gi|254780552|r   96 LAALL------TN----------LEDRDVLFIDEIHRLSIIV----EE---ILYPAMEDFQLDLMVGEGPSARSVKINLS  152 (334)
Q Consensus        96 l~~~~------~~----------~~~~~vlfiDEihrl~~~~----q~---~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~  152 (334)
T Consensus      1538 ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGf-w---~s~~~~wvT--I~ 1610 (3164)
T COG5245        1538 LSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGF-W---SSIAVSWVT--IC 1610 (3164)
T ss_pred             HHHHHHHCEEECCCCEEEECCCCCHHHEEEEEECCC-CCCCCCCCCCCEEEEEHHHHHHCCC-C---CCHHHHHHH--HC
T ss_conf             999986401523688279766742132178731147-7420013897448862877875255-5---536665762--11


Q ss_pred             CCEEEECCCCC---CCCCHH--HHHCCCCEEECCCCCHHHHHHHHH
Q ss_conf             40055204554---335545--442012067326454799999877
Q gi|254780552|r  153 RFTLIAATTRV---GLLTNP--LQDRFGIPIRLNFYEIEDLKTIVQ  193 (334)
Q Consensus       153 ~f~lI~ATt~~---~~l~~~--l~sR~~~~~~~~~~~~~el~~il~  193 (334)
T Consensus      1611 ~i~l~Gacnp~td~gRv~~~eRf~r~-~v~vf~~ype~~SL~~Iye 1655 (3164)
T COG5245        1611 GIILYGACNPGTDEGRVKYYERFIRK-PVFVFCCYPELASLRNIYE 1655 (3164)
T ss_pred             CEEEECCCCCCCCCCCCCCHHHHHCC-CEEEEECCCCHHHHHHHHH
T ss_conf             35998368999996657527787468-3599962863344999999