HHsearch alignment for GI: 254780552 and conserved domain: PRK04132

>PRK04132 replication factor C small subunit; Provisional.
Probab=99.97  E-value=4.1e-29  Score=197.55  Aligned_cols=148  Identities=20%  Similarity=0.113  Sum_probs=104.8

Q ss_pred             EEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             05520455433554544201206732645479999987776541210111111123320221015678877754333455
Q gi|254780552|r  155 TLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAE  234 (334)
Q Consensus       155 ~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~  234 (334)
T Consensus       677 ~~~~SCNYsSKIIePIQSRCa-vFRF~PL~~e~v~~RL~~Ia~~Egv~itedGleAI~~~aeGDMRkAIN~LQsa-----  750 (863)
T PRK04132        677 FVSHNCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYVAEGDMRRAINVLQAA-----  750 (863)
T ss_pred             EEEEECCCCCCCCCHHHCCEE-EEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH-----
T ss_conf             179866760407416655624-78836899999999999999974997677899999997567489999999999-----


Q ss_pred             HHCCCCCCHHHHHHHHHHHH---CC------CCH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH--HHHHH
Q ss_conf             41588642778787654210---00------000-46776889999997518662069999998287456746--78999
Q gi|254780552|r  235 VAHAKTITREIADAALLRLA---ID------KMG-FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIE--DLIEP  302 (334)
Q Consensus       235 ~~~~~~i~~~~~~~~l~~~~---id------~~G-l~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~--daa~~  302 (334)
T Consensus       751 a~~~~~Vt~d~Vy~v~~~p~P~~I~~~l~~al~g~f~~-A~~~L~~l--l~~~GlS~~DII~~i~r~v~~l~ipe~~kv~  827 (863)
T PRK04132        751 AALDTKITDENVFKVASRARPEDIREMMLLALKGNFLK-AREKLREI--LLKQGLSGEDVLVQMHREVFNLPIDEPKKVY  827 (863)
T ss_pred             HHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHHH--HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             86169878889999708999899999999997299899-99999999--9966969899999999999617998789999


Q ss_pred             HHHHHHHCC
Q ss_conf             999834305
Q gi|254780552|r  303 YMIQQGFIQ  311 (334)
Q Consensus       303 yL~r~g~~~  311 (334)
T Consensus       828 li~~ige~e  836 (863)
T PRK04132        828 LADKIGEYN  836 (863)
T ss_pred             HHHHHHHHH
T ss_conf             999997667