HHsearch alignment for GI: 254780552 and conserved domain: PRK05574
>PRK05574 holA DNA polymerase III subunit delta; Reviewed.
Probab=98.09 E-value=0.0001 Score=48.35 Aligned_cols=179 Identities=16% Similarity=0.117 Sum_probs=104.5
Q ss_pred CCCE-EEECCC-CCCHHHHHHHHHHHCCCC-----CCCCCCCCCCCHHHHHHHH---HHHHCCCHHHHHHHHHCCHH---
Q ss_conf 6707-997378-855778999999861898-----5312576443346766666---64101637888757616989---
Q gi|254780552|r 54 LDHV-LFVGPP-GLGKTTLAQVVARELGVN-----FRSTSGPVIAKAGDLAALL---TNLEDRDVLFIDEIHRLSII--- 120 (334)
Q Consensus 54 ~~h~-Lf~GPp-G~GKTtlA~iiA~~l~~~-----~~~~s~~~~~~~~dl~~~~---~~~~~~~vlfiDEihrl~~~--- 120 (334)
T Consensus 15 l~pvyli~G~e~~li~~~~~~i~~~~~~~~~~~~n~~~~d~~~~-~~~~l~~~~~t~slf~~krlViv~~~~~~~~k~~~ 93 (336)
T PRK05574 15 LAPVYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTVDGSET-DWDDVLEACQSLPLFSDRKLVELRLPEGLTGKKGE 93 (336)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC-CHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHH
T ss_conf 98679998586999999999999986077865305899716869-99999998648997789759999888766531137
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC---CCCHH--HHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf -99999998634751002567876520004667400552045543---35545--4420120673264547999998777
Q gi|254780552|r 121 -VEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG---LLTNP--LQDRFGIPIRLNFYEIEDLKTIVQR 194 (334)
Q Consensus 121 -~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~---~l~~~--l~sR~~~~~~~~~~~~~el~~il~~ 194 (334)
T Consensus 94 ~~l~~l~~~l~~~~--------~~--~------~lvli~~~~~~d~~~k~~k~~k~l~~~~~~i~~~~~~~~~l~~~i~~ 157 (336)
T PRK05574 94 EALKRLEAYLENPL--------PH--T------DLLLLAPLPKLDKRKEKSAWFKALKKKAVVVEAQTPKEAELPQWIQQ 157 (336)
T ss_pred HHHHHHHHHHHCCC--------CC--C------EEEEEEECCCCCHHHHHHHHHHHHHHCEEEEEECCCCHHHHHHHHHH
T ss_conf 99999999870799--------99--7------69999877863368888999999984807998069998999999999
Q ss_pred HHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 6541210111111123320221015678877754333455415886427787876542
Q gi|254780552|r 195 GAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLR 252 (334)
Q Consensus 195 ~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~ 252 (334)
T Consensus 158 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~---~~~~It~~dV~~~v~~ 212 (336)
T PRK05574 158 RLKQQGLRIDAAALQLLAERVEGNLLALAQEIEKLALLY---PDGKITLEDVEEAVPD 212 (336)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHCC
T ss_conf 999849998989999999972113999999999999837---8888789999998616