HHsearch alignment for GI: 254780552 and conserved domain: PRK05707
>PRK05707 DNA polymerase III subunit delta'; Validated.
Probab=99.79 E-value=2.2e-18 Score=131.95 Aligned_cols=152 Identities=21% Similarity=0.273 Sum_probs=109.6
Q ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHCCCCC-------------CCCC---CCC---C--------CCHHHHHHHHHHH-
Q ss_conf 7670-79973788557789999998618985-------------3125---764---4--------3346766666641-
Q gi|254780552|r 53 ALDH-VLFVGPPGLGKTTLAQVVARELGVNF-------------RSTS---GPV---I--------AKAGDLAALLTNL- 103 (334)
Q Consensus 53 ~~~h-~Lf~GPpG~GKTtlA~iiA~~l~~~~-------------~~~s---~~~---~--------~~~~dl~~~~~~~- 103 (334)
T Consensus 20 rl~HA~Lf~G~~G~GK~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~~~HPD~~~i~pe~~~~~I~IdqIR~l~~~~~ 99 (328)
T PRK05707 20 RHAHAYLLHGPAGIGKRALAERLAAFLLCEAPQGGGACGSCKGCQLLAAGSHPDNFVLEPEEADKPIKVDQVRELVSFVV 99 (328)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 82204644799986799999999999848999998999888899998758999879984266677697999999999983
Q ss_pred -----HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf -----016378887576169899999999863475100256787652000466740055204554335545442012067
Q gi|254780552|r 104 -----EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPI 178 (334)
Q Consensus 104 -----~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~ 178 (334)
T Consensus 100 ~~~~~g~~KV~iI~~Ae~m~~~AaNALLKtLEE----------Pp--------~~t~fiL~t~~~~~lLpTI~SRCq-~~ 160 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE----------PS--------GQTVLLLISHQPSRLLPTIKSRCQ-QL 160 (328)
T ss_pred HCCCCCCCEEEEEEHHHHHCHHHHHHHHHHHHC----------CC--------CCEEEEEEECCHHHCHHHHHHCCE-EE
T ss_conf 176678957999502877389999999998507----------89--------875999860993448258874141-33
Q ss_pred ECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 3264547999998777654121011111112332022101567887775
Q gi|254780552|r 179 RLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 179 ~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
T Consensus 161 ~~~~p~~e~~~~~L~~~~----~~~~~~~a~~ll~la~G~p~~A~~l~~ 205 (328)
T PRK05707 161 ACPLPSNEPSLQWLQQAL----PESDAEERIELLTLAAGSPLRALQLHA 205 (328)
T ss_pred ECCCCCHHHHHHHHHHHC----CCCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 489989999999999755----655789999999974999999998748