HHsearch alignment for GI: 254780552 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=99.64 E-value=5.4e-15 Score=111.18 Aligned_cols=199 Identities=21% Similarity=0.204 Sum_probs=135.6
Q ss_pred CCHHHHC-CHHH-HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHH-HH
Q ss_conf 9877823-9799-99999999998661467767079973788557789999998618---98531257644334676-66
Q gi|254780552|r 25 RTLEEFT-GQVE-ACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDL-AA 98 (334)
Q Consensus 25 ~~l~dvi-GQ~~-~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl-~~ 98 (334)
T Consensus 13 ~tfdnF~~~~n~~~~~~l~---~~~~--~~~~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~---~~~~~~~~~~ 84 (229)
T PRK06893 13 ETLDNFYSDNNLLLLDSLR---KNFI--DLKQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP---LSKSQYFSPA 84 (229)
T ss_pred CCHHCCCCCCHHHHHHHHH---HHCC--CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEE---HHHHHHCCHH
T ss_conf 6543154687499999999---7550--246987999899999889999999999997189859997---3775640699
Q ss_pred HHHHHHCCCHHHHHHHHHCC--HHHHHHHHHHH----HCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHH
Q ss_conf 66641016378887576169--89999999986----3475100256787652000466740055204554335---545
Q gi|254780552|r 99 LLTNLEDRDVLFIDEIHRLS--IIVEEILYPAM----EDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNP 169 (334)
Q Consensus 99 ~~~~~~~~~vlfiDEihrl~--~~~q~~Ll~~m----E~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~ 169 (334)
T Consensus 85 ~l~~l~~~d~l~iDDi~~i~g~~~~e~~lF~l~N~l~~~~~~-------------------~ll~ss~~~p~~l~~~l~D 145 (229)
T PRK06893 85 VLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKESGKT-------------------LLLISANQSPHALQIKLPD 145 (229)
T ss_pred HHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCC-------------------EEEEECCCCHHHHCCHHHH
T ss_conf 998765479799967234248838999999999999975991-------------------7998579883322100267
Q ss_pred HHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 44201--2067326454799999877765412101111111233202210156788777543334554158864277878
Q gi|254780552|r 170 LQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 (334)
Q Consensus 170 l~sR~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~ 247 (334)
T Consensus 146 L~SRl~~~~~~~i~~~dd~~~~~iL~~~a~~rgl~l~~~v~~yl~~r~~R~~~~l~~~l~~L-d~~sl~~kr~iTiplvk 224 (229)
T PRK06893 146 LASRLTWGEIYQLNDLTDEQKIEVLQRNAYQRGIELSDETANFLLKRLDRDMHTLFDALDLL-DKASLQAQRKLTIPFVK 224 (229)
T ss_pred HHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHCCCCCHHHHH
T ss_conf 99999688369966777579999999999964999998999999998347899999999999-99999808999999999
Q ss_pred HHHH
Q ss_conf 7654
Q gi|254780552|r 248 AALL 251 (334)
Q Consensus 248 ~~l~ 251 (334)
T Consensus 225 evL~ 228 (229)
T PRK06893 225 EILG 228 (229)
T ss_pred HHHC
T ss_conf 9868