HHsearch alignment for GI: 254780552 and conserved domain: PRK07003
>PRK07003 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=312.93 Aligned_cols=210 Identities=23% Similarity=0.282 Sum_probs=179.8
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCC--------------
Q ss_conf 57875078987782397999999999999866146776707-997378855778999999861898--------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVN-------------- 81 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~-------------- 81 (334)
T Consensus 5 vlark~RP~~f~e~vGQ~~v~~~l~nal~~~r-----l~haylf~G~rGvGKTt~aRi~Ak~lnC~~~~~~~pcg~C~~C 79 (816)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (816)
T ss_pred HHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 77755089857662384999999999997098-----6314751178988888999999998678999998978775557
Q ss_pred ----------CCCCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ----------53125764433467666666410------16378887576169899999999863475100256787652
Q gi|254780552|r 82 ----------FRSTSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 82 ----------~~~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
T Consensus 80 ~~i~~g~~~d~iEiDaAS~~~vd~~r~l~~~~~y~p~~~r~KvyiiDEvHmls~~afnalLKtlEe-------------- 145 (816)
T PRK07003 80 REIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-------------- 145 (816)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC--------------
T ss_conf 877558877547863554357689999998622478667447999841543399999999984037--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
T Consensus 146 ----pP~hv~FilaTTd~~k~p~tilSRc-~~f~l~~~~~~~i~~~l~~i~~~E~i~~e~~al~lia~~a~GsmRDalsl 220 (816)
T PRK07003 146 ----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSL 220 (816)
T ss_pred ----CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----9866489995588011528898777-65223679999999999999998299779999999999767737888859
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 75433345541588642778787654210
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 221 ~d----Qaia~~~g~~~~~~v~~mLG~~d 245 (816)
T PRK07003 221 TD----QAIAYSANEVTETAVSGMLGALD 245 (816)
T ss_pred HH----HHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99----99984699737999999858887