HHsearch alignment for GI: 254780552 and conserved domain: PRK07471
>PRK07471 DNA polymerase III subunit delta'; Validated.
Probab=99.96 E-value=1.1e-28 Score=194.92 Aligned_cols=179 Identities=23% Similarity=0.302 Sum_probs=137.2
Q ss_pred CCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC-----------------
Q ss_conf 078987782397999999999999866146776707-99737885577899999986189853-----------------
Q gi|254780552|r 22 LRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR----------------- 83 (334)
Q Consensus 22 lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~----------------- 83 (334)
T Consensus 11 p~P~~~~~liGqe~~~~~L~~a~~~gr-----l~HA~Lf~Gp~GiGK~tlA~~~A~~ll~~~~~~~~~~~~~~~~l~~~~ 85 (363)
T PRK07471 11 PHPRETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDAVFPPPASLAVDP 85 (363)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCC
T ss_conf 599982731681999999999998599-----764587679998188999999999985799977777678705312587
Q ss_pred ------CCC-C--CC---CC--------------CHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHC
Q ss_conf ------125-7--64---43--------------346766666641------0163788875761698999999998634
Q gi|254780552|r 84 ------STS-G--PV---IA--------------KAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMED 131 (334)
Q Consensus 84 ------~~s-~--~~---~~--------------~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~ 131 (334)
T Consensus 86 ~~p~~r~i~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~aaNALLK~LEE 165 (363)
T PRK07471 86 DHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 165 (363)
T ss_pred CCCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHHHHHHHHHHCC
T ss_conf 77289999526999846676200113332124453999999999972485248966999868787388999999997215
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 75100256787652000466740055204554335545442012067326454799999877765412101111111233
Q gi|254780552|r 132 FQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEI 211 (334)
Q Consensus 132 ~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~i 211 (334)
T Consensus 166 ----------PP~--------~t~fiLit~~~~~llpTI~SRCq-~~~~~~l~~~~~~~~L~~---~~~~~~~~~~~~~l 223 (363)
T PRK07471 166 ----------PPA--------RSLLLLVSHAPARLLPTIRSRCR-KLRLRPLAPEDVIAALAE---AGGPALDDAELAAL 223 (363)
T ss_pred ----------CCC--------CEEEEEEECCHHHCHHHHHHHCC-CCCCCCCCHHHHHHHHHH---HCCCCCCHHHHHHH
T ss_conf ----------898--------83899863997777799997352-425899599999999998---43899998999999
Q ss_pred HCCCCCCHHHHHHHHH
Q ss_conf 2022101567887775
Q gi|254780552|r 212 AMRSRGTPRIAGRLLR 227 (334)
Q Consensus 212 a~~s~Gd~R~AlnlLe 227 (334)
T Consensus 224 a~~a~Gs~~~Al~l~~ 239 (363)
T PRK07471 224 AALAEGSVGRALRLAG 239 (363)
T ss_pred HHHCCCCHHHHHHHHC
T ss_conf 9975899999998747