HHsearch alignment for GI: 254780552 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=99.68 E-value=1.3e-15 Score=115.00 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=136.1
Q ss_pred CCCHHHHC-CHH-HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCHHHHHH
Q ss_conf 89877823-979-999999999998661467767079973788557789999998618---9853125764433467666
Q gi|254780552|r 24 PRTLEEFT-GQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELG---VNFRSTSGPVIAKAGDLAA 98 (334)
Q Consensus 24 P~~l~dvi-GQ~-~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~---~~~~~~s~~~~~~~~dl~~ 98 (334)
T Consensus 18 ~~tfdnFi~g~n~~~~~al~~~~---~~--~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~~~~~yl~~~~--~~~~~~~ 90 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNVL---RQ--EHSGYIYLWGREGAGRSHLLHAACAELSQRGDAVGYVPLDK--RAWFVPE 90 (235)
T ss_pred CCCHHCCCCCCCHHHHHHHHHHH---HC--CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHH--HHHHHHH
T ss_conf 76630234488699999999998---57--89876999899998889999999999970798579987798--6651799
Q ss_pred HHHHHHCCCHHHHHHHHHCC--HHHHHHHHHH----HHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCC---CHH
Q ss_conf 66641016378887576169--8999999998----63475100256787652000466740055204554335---545
Q gi|254780552|r 99 LLTNLEDRDVLFIDEIHRLS--IIVEEILYPA----MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGLL---TNP 169 (334)
Q Consensus 99 ~~~~~~~~~vlfiDEihrl~--~~~q~~Ll~~----mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l---~~~ 169 (334)
T Consensus 91 ~l~~l~~~dll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~-------------------ll~ts~~~P~~l~~~l~D 151 (235)
T PRK08084 91 VLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTR-------------------LLITGDRPPRQLNLGLPD 151 (235)
T ss_pred HHHHHHHCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCE-------------------EEEECCCCHHHCCCCCHH
T ss_conf 9987641898998274554699789999999999999848966-------------------999679882430231288
Q ss_pred HHHCC--CCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 44201--2067326454799999877765412101111111233202210156788777543334554158864277878
Q gi|254780552|r 170 LQDRF--GIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTITREIAD 247 (334)
Q Consensus 170 l~sR~--~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~ 247 (334)
T Consensus 152 L~SRl~~g~~~~i~~~dde~~~~iL~~~a~~rgl~l~~~V~~yl~~~~~R~~~~L~~~l~~Ld-~~Sl~~kr~iTip~vk 230 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD-KASITAQRKLTIPFVK 230 (235)
T ss_pred HHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-HHHHHCCCCCCHHHHH
T ss_conf 999995697278559998999999999999739999989999999861588999999999999-9999819999999999
Q ss_pred HHHH
Q ss_conf 7654
Q gi|254780552|r 248 AALL 251 (334)
Q Consensus 248 ~~l~ 251 (334)
T Consensus 231 evL~ 234 (235)
T PRK08084 231 EILK 234 (235)
T ss_pred HHHC
T ss_conf 9965