HHsearch alignment for GI: 254780552 and conserved domain: PRK08116

Probab=98.81  E-value=1.4e-08  Score=71.90  Aligned_cols=110  Identities=26%  Similarity=0.404  Sum_probs=64.9

Q ss_pred             CCCCHHHHC---CHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCC-CCHH-
Q ss_conf             789877823---97999999999999866146776707997378855778999999861---898531257644-3346-
Q gi|254780552|r   23 RPRTLEEFT---GQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVI-AKAG-   94 (334)
Q Consensus        23 RP~~l~dvi---GQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~-~~~~-   94 (334)
T Consensus        74 ~~~tFeN~~~~~~~~~a~~~a~~Y~~~f~~~~~~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~  153 (262)
T PRK08116         74 RNSTFENWLFRKGSEKAYKVAVKYVKKFEEMKKESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKS  153 (262)
T ss_pred             HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
T ss_conf             81922255689525999999999999898736468618998989998999999999999987993999889999999999


Q ss_pred             --------HHHHHHHHHHCCCHHHHHHHH--HCCHHHHHHHHHHHHCC
Q ss_conf             --------766666641016378887576--16989999999986347
Q gi|254780552|r   95 --------DLAALLTNLEDRDVLFIDEIH--RLSIIVEEILYPAMEDF  132 (334)
Q Consensus        95 --------dl~~~~~~~~~~~vlfiDEih--rl~~~~q~~Ll~~mE~~  132 (334)
T Consensus       154 ~~~~~~~~~~~e~l~~l~~~dLLIiDDlG~e~~t~w~~e~lf~IIn~R  201 (262)
T PRK08116        154 TYNSEGKEDENEIIRALDNADLLILDDLGAEKDTEWVREKLYNIIDSR  201 (262)
T ss_pred             HHHCCCCHHHHHHHHHHHCCCEEEEEHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             986356101999999861299899832214569878999999999999