HHsearch alignment for GI: 254780552 and conserved domain: PRK08451
>PRK08451 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=4.2e-45 Score=294.95 Aligned_cols=209 Identities=23% Similarity=0.257 Sum_probs=173.0
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC------------
Q ss_conf 57875078987782397999999999999866146776707-99737885577899999986189853------------
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------------ 83 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------------ 83 (334)
T Consensus 3 ~LarKYRP~~F~evIGQe~iv~~L~nAi~~~R-----l~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC 77 (523)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQC 77 (523)
T ss_pred HHHHHHCCCCHHHCCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 14442089965440494999999999998599-----6715875789986889999999999759999998988878889
Q ss_pred ------------CCCCCCCCCHHHHHHHHHHH------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf ------------12576443346766666641------016378887576169899999999863475100256787652
Q gi|254780552|r 84 ------------STSGPVIAKAGDLAALLTNL------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSAR 145 (334)
Q Consensus 84 ------------~~s~~~~~~~~dl~~~~~~~------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~ 145 (334)
T Consensus 78 ~~i~~g~hpDViEiDaasn~gID~IReLie~~~~~P~~gryKV~IIDEah~Lt~~A~NALLKTLEE-------------- 143 (523)
T PRK08451 78 QAALEGRHIDIIEMDAASNRGIDDIRNLIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-------------- 143 (523)
T ss_pred HHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCC--------------
T ss_conf 998648999855105533368999999999723588679727999826030489999999997038--------------
Q ss_pred EEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 00046674005520455433554544201206732645479999987776541210111111123320221015678877
Q gi|254780552|r 146 SVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRL 225 (334)
Q Consensus 146 ~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~Alnl 225 (334)
T Consensus 144 ----PP~~vvFILaTTep~KLp~TIlSRCQ-~f~Fk~I~~~~I~~~L~~I~~~E~i~~e~~AL~~IA~~a~GslRDalsl 218 (523)
T PRK08451 144 ----PPSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILNKEGVSYEPEALEILARSGSGSLRDTLTL 218 (523)
T ss_pred ----CCCCCEEEEECCCHHHCHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf ----98783799975994768488874203-1103379999999999999998399879999999999778948689879
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 7543334554158864277878765421
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAALLRL 253 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l~~~ 253 (334)
T Consensus 219 LdQ~----i~~~~~~i~~~~v~~~lG~~ 242 (523)
T PRK08451 219 LDQA----IIFCKNAITESKVADMLGLL 242 (523)
T ss_pred HHHH----HHHCCCCCCHHHHHHHHCCC
T ss_conf 9999----98479987799999985888