HHsearch alignment for GI: 254780552 and conserved domain: PRK08770
>PRK08770 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=2.8e-45 Score=296.36 Aligned_cols=209 Identities=21% Similarity=0.307 Sum_probs=177.4
Q ss_pred HHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCC-----------
Q ss_conf 7875078987782397999999999999866146776707-9973788557789999998618985312-----------
Q gi|254780552|r 18 DISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRST----------- 85 (334)
Q Consensus 18 ~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~----------- 85 (334)
T Consensus 6 ~a~k~rp~~f~~~~gq~~~~~~l~~~~~~~~-----~~~a~lf~g~rg~gkt~~ar~~a~~lnc~~~~~~~pc~~c~~c~ 80 (663)
T PRK08770 6 LARKWRPKRFAELVGQEHVVRALSNALDSGR-----VHHAFLFTGTRGVGKTTIARIFAKSLNCETGTSADPCGQCPACL 80 (663)
T ss_pred HHHHHCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf 7755088746452285999999999997099-----74047622799888889999999986789999999787787789
Q ss_pred -------------CCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf -------------5764433467666666410------163788875761698999999998634751002567876520
Q gi|254780552|r 86 -------------SGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARS 146 (334)
Q Consensus 86 -------------s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~ 146 (334)
T Consensus 81 ~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kvy~idevhmls~~~fna~lktlee--------------- 145 (663)
T PRK08770 81 DIDAGRYIDLLEIDAASNTGVDDVREVIENAQYMPSRGKFKVYLIDEVHMLSKAAFNALLKTLEE--------------- 145 (663)
T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECHHHCCHHHHHHHHHHHCC---------------
T ss_conf 88548988658864676588899999998443588777436999700433289999999874027---------------
Q ss_pred EECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 00466740055204554335545442012067326454799999877765412101111111233202210156788777
Q gi|254780552|r 147 VKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLL 226 (334)
Q Consensus 147 ~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlL 226 (334)
T Consensus 146 ---pp~~v~f~~att~~~k~p~t~~src-~~f~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~gs~rd~lsl~ 221 (663)
T PRK08770 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKRLDEDQIQGQMTRILAAEQIESDPSAIVQLSKAADGSLRDGLSLL 221 (663)
T ss_pred ---CCCCEEEEEECCCHHHCCHHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ---8644289985487333748999888-763437799999999999999983997699999999997478567788899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 5433345541588642778787654210
Q gi|254780552|r 227 RRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 227 e~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 222 ~q----~~~~~~~~~~~~~v~~mlg~~~ 245 (663)
T PRK08770 222 DQ----AIAYAGGALREDVVRTMLGTVD 245 (663)
T ss_pred HH----HHHHCCCCCCHHHHHHHHCCCC
T ss_conf 99----9986689768999999848888