HHsearch alignment for GI: 254780552 and conserved domain: PRK09111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated.
Probab=100.00 E-value=0 Score=305.78 Aligned_cols=215 Identities=24% Similarity=0.284 Sum_probs=178.4
Q ss_pred CCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCC-------
Q ss_conf 4412057875078987782397999999999999866146776707-99737885577899999986189853-------
Q gi|254780552|r 12 VSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFR------- 83 (334)
Q Consensus 12 ~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~------- 83 (334)
T Consensus 7 ~~~y~~l~~k~rp~~f~~~~gq~~~~~~l~~~~~~~~-----~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~ 81 (600)
T PRK09111 7 ATPYRVLARKYRPQTFDDLIGQEAMVRTLRNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPT 81 (600)
T ss_pred CCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHCCC-----CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9860243210179877663385999999999997298-----42047645789878999999999996698876668998
Q ss_pred ----------------------CCCCCCCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
Q ss_conf ----------------------125764433467666666410------1637888757616989999999986347510
Q gi|254780552|r 84 ----------------------STSGPVIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLD 135 (334)
Q Consensus 84 ----------------------~~s~~~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~ 135 (334)
T Consensus 82 ~~~c~~c~~c~~i~~~~~~d~~e~daas~~~v~~~r~~~~~~~~~p~~~~~kv~iidevhmls~~afnallktlee---- 157 (600)
T PRK09111 82 IDPCGVGEHCQAIMEGRHVDVIEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE---- 157 (600)
T ss_pred CCCCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHC----
T ss_conf 8989988658988668998758851554578889999998605388777546999600110579999999987625----
Q ss_pred CCCCCCCCCCEEECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 02567876520004667400552045543355454420120673264547999998777654121011111112332022
Q gi|254780552|r 136 LMVGEGPSARSVKINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRS 215 (334)
Q Consensus 136 i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s 215 (334)
T Consensus 158 --------------pp~~~~fi~att~~~k~p~ti~src~-~f~~~~~~~~~~~~~l~~i~~~e~~~~~~~al~~ia~~a 222 (600)
T PRK09111 158 --------------PPPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEAEVLAAHLARIAEKEGVEVEPDALALIARAA 222 (600)
T ss_pred --------------CCCCEEEEEECCCHHHCCHHHHHHHH-EECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf --------------98654999962853437589985441-201057999999999999998607686677999999974
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 101567887775433345541588642778787654210
Q gi|254780552|r 216 RGTPRIAGRLLRRVRDFAEVAHAKTITREIADAALLRLA 254 (334)
Q Consensus 216 ~Gd~R~AlnlLe~v~d~a~~~~~~~i~~~~~~~~l~~~~ 254 (334)
T Consensus 223 ~GS~RDaLSlLDQa----i~~~~~~i~~~~v~~mLGl~d 257 (600)
T PRK09111 223 EGSVRDGLSLLDQA----IAHGAGEVTAEQVRDMLGLAD 257 (600)
T ss_pred CCCCCHHHHHHHHH----HHCCCCCCCHHHHHHHHCCCC
T ss_conf 89842189999999----972798756999999868876