HHsearch alignment for GI: 254780552 and conserved domain: PRK10787
>PRK10787 DNA-binding ATP-dependent protease La; Provisional.
Probab=99.86 E-value=2.1e-21 Score=150.39 Aligned_cols=232 Identities=20% Similarity=0.263 Sum_probs=143.4
Q ss_pred CCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 2057875078987782397999999999999866146776707-997378855778999999861898531257644334
Q gi|254780552|r 15 EDADISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 (334)
Q Consensus 15 ~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~ 93 (334)
T Consensus 309 d~~dl~~A~~iLd~dHyGL~~vKeRile~lAv~~~~~~~kg~IlclvGpPGvGKTSl~~sIA~al~r~f~rislGGv~De 388 (784)
T PRK10787 309 VKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDE 388 (784)
T ss_pred CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf 75699999998765430657799999999999986246778779964699877246999999985898699806887888
Q ss_pred HHHHH------------HHHH---H-HCCCHHHHHHHHHCCHHH----HHHHHHHHHCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 67666------------6664---1-016378887576169899----99999986347510025678765200046674
Q gi|254780552|r 94 GDLAA------------LLTN---L-EDRDVLFIDEIHRLSIIV----EEILYPAMEDFQLDLMVGEGPSARSVKINLSR 153 (334)
Q Consensus 94 ~dl~~------------~~~~---~-~~~~vlfiDEihrl~~~~----q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~ 153 (334)
T Consensus 389 aeirGHrrTYvgampGrii~~l~~a~~~nPv~llDEiDK~~~~~~Gdp~salLEvLDpeQN~~F~D---hyl~~~~DlS~ 465 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSD---HYLEVDYDLSD 465 (784)
T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEHHHHHHCCCCCCCHHHHHHHHCCHHHCCCCCC---CEEECCCCHHH
T ss_conf 882564334344368389999997489885665003555224558998899998459765564000---32204645222
Q ss_pred CEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHH----------HHHCCCHHHHHHHHHHHCCC--CCCHHH
Q ss_conf 005520455433554544201206732645479999987776----------54121011111112332022--101567
Q gi|254780552|r 154 FTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----------AKLTGLAVTDEAACEIAMRS--RGTPRI 221 (334)
Q Consensus 154 f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~----------~~~~~i~~~~~al~~ia~~s--~Gd~R~ 221 (334)
T Consensus 466 v~Fi~TaN~~~-ip~pLlDRmE-~i~~~gYt~~eK~~Ia~~~l~p~~~~~~gl~~~~~~~~~~~~~~ii~~ytrEaGvR~ 543 (784)
T PRK10787 466 VMFVATSNSMN-IPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred EEEEEECCCCC-CCHHHHHHEE-EEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCC
T ss_conf 58997327677-8767763121-554116767889999997453999998289965674399999998753365444251
Q ss_pred HHHHHHHHHHHHH---H--HCCC--CCCHHHHHHHHH
Q ss_conf 8877754333455---4--1588--642778787654
Q gi|254780552|r 222 AGRLLRRVRDFAE---V--AHAK--TITREIADAALL 251 (334)
Q Consensus 222 AlnlLe~v~d~a~---~--~~~~--~i~~~~~~~~l~ 251 (334)
T Consensus 544 ler~i~~i~rk~~~~~~~~~~~~~~~i~~~~l~~~lg 580 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHC
T ss_conf 6889999999999999707887855888999999829