HHsearch alignment for GI: 254780552 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.73 E-value=2.9e-16 Score=118.98 Aligned_cols=180 Identities=23% Similarity=0.312 Sum_probs=122.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH---HHHH---
Q ss_conf 782397999999999999866----146776707997378855778999999861898531257644334---6766---
Q gi|254780552|r 28 EEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA---GDLA--- 97 (334)
Q Consensus 28 ~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~---~dl~--- 97 (334)
T Consensus 458 ~~viGQ~~Ai~~v~~ai~~~raGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMSEy~e~hsvsrLiGaP 537 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHCCCC
T ss_conf 78745499999999999998638889999705899978998777999999999986677214266531201477744899
Q ss_pred ---------HHHH---HHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC--
Q ss_conf ---------6666---41016378887576169899999999863475100256787652000466740055204554--
Q gi|254780552|r 98 ---------ALLT---NLEDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV-- 163 (334)
Q Consensus 98 ---------~~~~---~~~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~-- 163 (334)
T Consensus 538 PGYVGy~eGG~Lte~Vr~~PysVvL~DEIEKAhpdV~nilLQvlD~G~LtD~~Gr-------~vdF~N-tiIImTSN~Ga 609 (758)
T PRK11034 538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGR-------KADFRN-VVLVMTTNAGV 609 (758)
T ss_pred CCCCCCCCCCCCCHHHHHCCCEEEEEHHHHHHCHHHHHHHHHHCCCCCCCCCCCC-------EEECEE-EEEEEECCCCH
T ss_conf 8666767777012878739877997336756398999988732377830179999-------884400-19998256174
Q ss_pred ------------------------CCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHH---------HHCCCHHHHHHHHH
Q ss_conf ------------------------335545442012067326454799999877765---------41210111111123
Q gi|254780552|r 164 ------------------------GLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGA---------KLTGLAVTDEAACE 210 (334)
Q Consensus 164 ------------------------~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~---------~~~~i~~~~~al~~ 210 (334)
T Consensus 610 ~~~~~~~~gf~~~~~~~~~~~~l~~~F~PEFlNRiD~ii~F~~L~~~~l~~Iv~~~l~~l~~rL~~~~i~l~~~~~a~~~ 689 (758)
T PRK11034 610 RETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDW 689 (758)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHH
T ss_conf 87864214755420359999999954798677236747863889999999999999999999999789859988999999
Q ss_pred HHCCC
Q ss_conf 32022
Q gi|254780552|r 211 IAMRS 215 (334)
Q Consensus 211 ia~~s 215 (334)
T Consensus 690 l~~~g 694 (758)
T PRK11034 690 LAEKG 694 (758)
T ss_pred HHHHC
T ss_conf 99848