HHsearch alignment for GI: 254780552 and conserved domain: PRK13342
>PRK13342 recombination factor protein RarA; Reviewed.
Probab=100.00 E-value=0 Score=551.77 Aligned_cols=271 Identities=33% Similarity=0.403 Sum_probs=238.1
Q ss_pred HHHHHCCCCCHHHHCCHHHHHHH---HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 57875078987782397999999---999999866146776707997378855778999999861898531257644334
Q gi|254780552|r 17 ADISLLRPRTLEEFTGQVEACSN---LKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93 (334)
Q Consensus 17 ~~~~~lRP~~l~dviGQ~~~~~~---l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~~ 93 (334)
T Consensus 2 PLAer~RP~~lde~vGQ~hllg~~~~L~~~i~~-----~~~~s~Il~GPPG~GKTTlA~iiA~~~~~~f~~lnA-~~~gv 75 (417)
T PRK13342 2 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA-----GRLSSMILWGPPGTGKTTLARIIAGATDAEFEALSA-VTSGV 75 (417)
T ss_pred CCHHHHCCCCHHHHCCCHHHHCCCHHHHHHHHC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC-CCCCH
T ss_conf 871644999888857987760897199999976-----999759988969998999999999986898899614-10388
Q ss_pred HHHHHHHHHHH-----CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCC--CC
Q ss_conf 67666666410-----163788875761698999999998634751002567876520004667400552045543--35
Q gi|254780552|r 94 GDLAALLTNLE-----DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVG--LL 166 (334)
Q Consensus 94 ~dl~~~~~~~~-----~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~--~l 166 (334)
T Consensus 76 ~dir~ii~~a~~~~~~~~tilfiDEIHRfnK~QQD~LLp~vE~g~i--------------------iLIgATTENP~f~i 135 (417)
T PRK13342 76 KDLREVIEEAKQSRLGRRTILFIDEIHRFNKAQQDALLPHVEDGTI--------------------TLIGATTENPSFEV 135 (417)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHCCHHHHHHHHHHHHCCCE--------------------EEEEECCCCCHHHC
T ss_conf 9999999998863148965999978200588999999875112656--------------------99974157922534
Q ss_pred CHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 545442012067326454799999877765412-----101111111233202210156788777543334554158864
Q gi|254780552|r 167 TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLT-----GLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAHAKTI 241 (334)
Q Consensus 167 ~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~-----~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~~~~i 241 (334)
T Consensus 136 n~aLlSRc~-vf~l~~L~~~di~~iL~ral~~e~~~~~~i~i~~~al~~i~~~s~GDaR~aLN~LE~a~--~~~~~~~~i 212 (417)
T PRK13342 136 NPALLSRAQ-VFELKPLSEEDLEQLLKRALEDERGLGRKLELDDEALDALARLADGDARRALNLLELAA--AAAAGGEVI 212 (417)
T ss_pred CHHHHHHHH-HEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCCCCC
T ss_conf 898985657-00205899999999999999877433788776999999999814985999999999998--525899734
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHH--HHHH
Q ss_conf 27787876542100000046776889999997518662069999998287456746789999998343058718--9999
Q gi|254780552|r 242 TREIADAALLRLAIDKMGFDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQRTPR--GRLL 319 (334)
Q Consensus 242 ~~~~~~~~l~~~~id~~Gl~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~~~pr--gRrL 319 (334)
T Consensus 213 ~~~~~~~~~~~~~-----------------~~yDk~gd~HYd~iSAf~KSiRGSDpdAAlyyLarml~~GEDp~~IaRRL 275 (417)
T PRK13342 213 TLELLEEALQRRA-----------------ARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRL 275 (417)
T ss_pred CHHHHHHHHHHCC-----------------CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 8999999984410-----------------35777863478999999998516995489999999997599979999999
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 99888664888889
Q gi|254780552|r 320 MPIAWQHLGIDIPH 333 (334)
Q Consensus 320 ~~~a~EdiGla~P~ 333 (334)
T Consensus 276 ii~AsEDIGlAdP~ 289 (417)
T PRK13342 276 VIIASEDIGLADPN 289 (417)
T ss_pred HHHHHHHHCCCCHH
T ss_conf 99885440367878