HHsearch alignment for GI: 254780552 and conserved domain: PRK13531
>PRK13531 regulatory ATPase RavA; Provisional.
Probab=99.42 E-value=3.8e-12 Score=93.79 Aligned_cols=141 Identities=20% Similarity=0.262 Sum_probs=87.7
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCCH------HHHHHHHHH
Q ss_conf 2397999999999999866146776707997378855778999999861-898531257644334------676666664
Q gi|254780552|r 30 FTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL-GVNFRSTSGPVIAKA------GDLAALLTN 102 (334)
Q Consensus 30 viGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l-~~~~~~~s~~~~~~~------~dl~~~~~~ 102 (334)
T Consensus 22 l~ERe~~i~l~---lLaala----gehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRFstPeElFGP~si~~Lk~~ 94 (498)
T PRK13531 22 LYERSHAIRLC---LLAALS----GESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRFSTPEEVFGPLSIQALKDE 94 (498)
T ss_pred HHHHHHHHHHH---HHHHHC----CCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHCCCCCHHHHHHC
T ss_conf 14469999999---999972----89469888995138899999999855740899998746988885383329987117
Q ss_pred --H--------HCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCC---CCHH
Q ss_conf --1--------01637888757616989999999986347510025678765200046674005520455433---5545
Q gi|254780552|r 103 --L--------EDRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRVGL---LTNP 169 (334)
Q Consensus 103 --~--------~~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~~~---l~~~ 169 (334)
T Consensus 95 g~y~R~t~G~LP~A~iaFLDEIfKansAILNtLLtilNEr~f~----nG--~~--~~~vPL~~li~ASNElP~~~~~L~A 166 (498)
T PRK13531 95 GRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFR----NG--AH--EEKIPMRLLVAASNELPEADSSLEA 166 (498)
T ss_pred CEEEEECCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHHEEC----CC--CC--EECCCHHHHHHCCCCCCCCCCCHHH
T ss_conf 8489722675886613157878614889999999986464034----79--83--1304468864304679999840788
Q ss_pred HHHCCCCEEECCCCCH
Q ss_conf 4420120673264547
Q gi|254780552|r 170 LQDRFGIPIRLNFYEI 185 (334)
Q Consensus 170 l~sR~~~~~~~~~~~~ 185 (334)
T Consensus 167 lyDRfL~R~~v~~v~~ 182 (498)
T PRK13531 167 LYDRMLIRLWLDKVQD 182 (498)
T ss_pred HHHHHHHHEECCCCCC
T ss_conf 8876441022313167