HHsearch alignment for GI: 254780552 and conserved domain: PRK13851
>PRK13851 type IV secretion system protein VirB11; Provisional.
Probab=96.58 E-value=0.004 Score=38.64 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Q ss_conf 0799737885577899999986189
Q gi|254780552|r 56 HVLFVGPPGLGKTTLAQVVARELGV 80 (334)
Q Consensus 56 h~Lf~GPpG~GKTtlA~iiA~~l~~ 80 (334)
T Consensus 164 NIlIsGgTGSGKTTllnALl~~IP~ 188 (343)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (343)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 8999888986199999999962896