HHsearch alignment for GI: 254780552 and conserved domain: TIGR00362
>TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication.
Probab=97.51 E-value=0.0077 Score=36.86 Aligned_cols=254 Identities=20% Similarity=0.278 Sum_probs=140.4
Q ss_pred CHHHHC-CHHHHHHHHHHHHHHHHHCCC-CCCCEEEECCCCCCHHHHHHHHHHHCC-----CCCCCCCCCCCCCHHHHHH
Q ss_conf 877823-979999999999998661467-767079973788557789999998618-----9853125764433467666
Q gi|254780552|r 26 TLEEFT-GQVEACSNLKVFIEAAKARAE-ALDHVLFVGPPGLGKTTLAQVVARELG-----VNFRSTSGPVIAKAGDLAA 98 (334)
Q Consensus 26 ~l~dvi-GQ~~~~~~l~~~i~a~~~~~~-~~~h~Lf~GPpG~GKTtlA~iiA~~l~-----~~~~~~s~~~~~~~~dl~~ 98 (334)
T Consensus 152 ~~~~~~~g~~~~~~~~-~~~~~~~~p~~p~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~ 228 (493)
T TIGR00362 152 TFDNFVVGPSNRLAYA-ASLKVAESPGKPAYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENF--LNDFVK 228 (493)
T ss_pred CCCCEEECCCCHHHHH-HHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHH--HHHHHH
T ss_conf 0000011465215677-7777640578766562477447542156787776434443067732788501467--899998
Q ss_pred H---------HHHHHCCCHHHHHHHHHCCHH---HHHHHHHH---HHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf 6---------664101637888757616989---99999998---63475100256787652000466740055204554
Q gi|254780552|r 99 L---------LTNLEDRDVLFIDEIHRLSII---VEEILYPA---MEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 99 ~---------~~~~~~~~vlfiDEihrl~~~---~q~~Ll~~---mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
T Consensus 229 ~~~~~~~~~~~~~~~~~d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~d~~ 287 (493)
T TIGR00362 229 ALRDNKLDDFKKKYRSLDFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGK---------------------QIVLTSDRS 287 (493)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC---------------------EEEEECCCC
T ss_conf 75200168888876311123111047641352036888888887740685---------------------278851666
Q ss_pred CC----CCHHHHHCCC--CEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 33----5545442012--06732645479999987776541210111111123320221015678877754333455415
Q gi|254780552|r 164 GL----LTNPLQDRFG--IPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLRRVRDFAEVAH 237 (334)
Q Consensus 164 ~~----l~~~l~sR~~--~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe~v~d~a~~~~ 237 (334)
T Consensus 288 p~~~~~~~~~l~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~ 366 (493)
T TIGR00362 288 PKEIPGLEDRLKSRFGWGLTADIEPPDLETRLAILKKKAEEDGINLPEEVLEYIAQHLTSNVRELEGALIRVKAYADL-D 366 (493)
T ss_pred CCHHCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C
T ss_conf 201000467776543014100024652357899988654430356527899999886422467776778877654200-1
Q ss_pred CCCCCHHHHHHHHHHHHC-CCCH------HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 886427787876542100-0000------4677688999999751866206999999828745674678999999834
Q gi|254780552|r 238 AKTITREIADAALLRLAI-DKMG------FDQLDLRYLTMIARNFGGGPVGIETISAGLSEPRDAIEDLIEPYMIQQG 308 (334)
Q Consensus 238 ~~~i~~~~~~~~l~~~~i-d~~G------l~~~d~~~L~~l~~~~~~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g 308 (334)
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (493)
T TIGR00362 367 NADIDLDLVAEVLKDLLPALKEKTNEPNNLVTIE-NILKVVAEYLKLK---VEDLKSKSRKRSVALPRQLALYLAREL 440 (493)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHH---HHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 2100177789999876544310256653210288-8999988875324---566642101002346889999999851