HHsearch alignment for GI: 254780552 and conserved domain: TIGR00602
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=99.63 E-value=4.4e-15 Score=111.76 Aligned_cols=211 Identities=18% Similarity=0.345 Sum_probs=125.3
Q ss_pred CCCCCCHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHH-----HHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 4441205787507898778239799999999999986-----61467767079973788557789999998618985312
Q gi|254780552|r 11 NVSQEDADISLLRPRTLEEFTGQVEACSNLKVFIEAA-----KARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRST 85 (334)
Q Consensus 11 ~~~~~~~~~~~lRP~~l~dviGQ~~~~~~l~~~i~a~-----~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~ 85 (334)
T Consensus 72 ~~d~~e~W~eKykP~~~~~lAvHK~Ki~~v~~wl~a~~Le~~~~rGGs~--LLi~GPsGCgKsT~~k~LsKelg~~~~ew 149 (670)
T TIGR00602 72 KEDRNELWVEKYKPETQEELAVHKKKIEEVEEWLKAQVLESAKKRGGSI--LLITGPSGCGKSTTIKILSKELGIKVQEW 149 (670)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEE--EEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 1357874410267542457766477799999997520020456677537--88417558844789999988864456554
Q ss_pred CCCCC-CCHHH----H---------------HHH----------HHHH--------HCCCHHHHHHHHHCC--------H
Q ss_conf 57644-33467----6---------------666----------6641--------016378887576169--------8
Q gi|254780552|r 86 SGPVI-AKAGD----L---------------AAL----------LTNL--------EDRDVLFIDEIHRLS--------I 119 (334)
Q Consensus 86 s~~~~-~~~~d----l---------------~~~----------~~~~--------~~~~vlfiDEihrl~--------~ 119 (334)
T Consensus 150 ~Np~~~~~~~n~~k~~~~~~~~f~~~PY~sq~e~f~efll~a~kY~~lQ~lG~~~~~~kk~Il~e~lPhln~F~~d~~rr 229 (670)
T TIGR00602 150 LNPVLLKEQKNDEKDTLSLESKFSRFPYLSQIEVFSEFLLRATKYNKLQKLGDDLQTDKKLILVEDLPHLNKFYRDLDRR 229 (670)
T ss_pred HCCCCCCCCCCHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHCCCHHHH
T ss_conf 07878888851244442125402216763145546787642123466642141102475457721376402213661268
Q ss_pred HHHHHHH-HHHHCCCCC---CCCCCC-------CCCC-EEECCCCCCEEEECCCCCCCCCHHHHHCCCC-EEECCCCCHH
Q ss_conf 9999999-986347510---025678-------7652-0004667400552045543355454420120-6732645479
Q gi|254780552|r 120 IVEEILY-PAMEDFQLD---LMVGEG-------PSAR-SVKINLSRFTLIAATTRVGLLTNPLQDRFGI-PIRLNFYEIE 186 (334)
Q Consensus 120 ~~q~~Ll-~~mE~~~i~---i~~~~~-------~~a~-~~~~~~~~f~lI~ATt~~~~l~~~l~sR~~~-~~~~~~~~~~ 186 (334)
T Consensus 230 ~~~~vlr~~~~~~g~~pPlv~~~te~~~~nlegdNnq~kfGi---r~~F~~-~~---IM~~~il~~pr~~~i~FNPiapT 302 (670)
T TIGR00602 230 ALREVLRTKYVSEGRLPPLVIIITESELNNLEGDNNQDKFGI---RLLFPA-VT---IMNKEILEEPRVSNIKFNPIAPT 302 (670)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHCCC---CCCCCH-HH---HHHHHHHCCCCCCCEECCCCCHH
T ss_conf 999999998623789883589971243444577555101041---013525-77---75266540776131001787178
Q ss_pred HHHHHHHHHHHHCC------CHH-HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99998777654121------011-111112332022101567887775433
Q gi|254780552|r 187 DLKTIVQRGAKLTG------LAV-TDEAACEIAMRSRGTPRIAGRLLRRVR 230 (334)
Q Consensus 187 el~~il~~~~~~~~------i~~-~~~al~~ia~~s~Gd~R~AlnlLe~v~ 230 (334)
T Consensus 303 ~mkK~L~~I~~~e~~~~~~K~~~~~~~~ve~~c~~~~GDiRSAInsLQfs~ 353 (670)
T TIGR00602 303 LMKKFLNRIVTKEAKKKGEKILVPKKTSVEDLCQGESGDIRSAINSLQFSS 353 (670)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999985556213143467854466346899997106884788888888643