HHsearch alignment for GI: 254780552 and conserved domain: TIGR01243

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.73  E-value=3e-18  Score=131.14  Aligned_cols=177  Identities=27%  Similarity=0.389  Sum_probs=123.9

Q ss_pred             CHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-C----
Q ss_conf             87782397999999999999866146--------7767079973788557789999998618985312576443-3----
Q gi|254780552|r   26 TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-K----   92 (334)
Q Consensus        26 ~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~-~----   92 (334)
T Consensus       539 ~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGe  618 (980)
T TIGR01243       539 KWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE  618 (980)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCH
T ss_conf             10014667899999987752344405899860788997348746898616888887740145646774073122344032


Q ss_pred             -HHHHHHHHHHHH--CCCHHHHHHHHHCCHHHH-------------HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf             -467666666410--163788875761698999-------------9999986347510025678765200046674005
Q gi|254780552|r   93 -AGDLAALLTNLE--DRDVLFIDEIHRLSIIVE-------------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL  156 (334)
Q Consensus        93 -~~dl~~~~~~~~--~~~vlfiDEihrl~~~~q-------------~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~l  156 (334)
T Consensus       619 se~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~dG~~----------------~~~~vvv  682 (980)
T TIGR01243       619 SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELDGLE----------------ELSDVVV  682 (980)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CCCCEEE
T ss_conf             479999999986412873787302111054124421001026899999998640443----------------4366589


Q ss_pred             EECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHCCCCCCHH
Q ss_conf             5204554335545442--0120673264547999998777654121011111-11233202210156
Q gi|254780552|r  157 IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-AACEIAMRSRGTPR  220 (334)
Q Consensus       157 I~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~-al~~ia~~s~Gd~R  220 (334)
T Consensus       683 i~atnrPdi~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~--~~~l~~dv~l~~la~~teGytG  747 (980)
T TIGR01243       683 IAATNRPDILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTR--SMPLAEDVDLEELAKKTEGYTG  747 (980)
T ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHCCCCC
T ss_conf             8615887423610048874121686059855676767655311--1353013438999865168763