HHsearch alignment for GI: 254780552 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.73 E-value=3e-18 Score=131.14 Aligned_cols=177 Identities=27% Similarity=0.389 Sum_probs=123.9
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCC--------CCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC-C----
Q ss_conf 87782397999999999999866146--------7767079973788557789999998618985312576443-3----
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARA--------EALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIA-K---- 92 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~--------~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~-~---- 92 (334)
T Consensus 539 ~W~diGGlee~kq~lreaveWPlk~~~~f~k~G~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGe 618 (980)
T TIGR01243 539 KWEDIGGLEEVKQELREAVEWPLKAPEVFEKLGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGE 618 (980)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCH
T ss_conf 10014667899999987752344405899860788997348746898616888887740145646774073122344032
Q ss_pred -HHHHHHHHHHHH--CCCHHHHHHHHHCCHHHH-------------HHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEE
Q ss_conf -467666666410--163788875761698999-------------9999986347510025678765200046674005
Q gi|254780552|r 93 -AGDLAALLTNLE--DRDVLFIDEIHRLSIIVE-------------EILYPAMEDFQLDLMVGEGPSARSVKINLSRFTL 156 (334)
Q Consensus 93 -~~dl~~~~~~~~--~~~vlfiDEihrl~~~~q-------------~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~l 156 (334)
T Consensus 619 se~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~~vtd~~~nqll~e~dG~~----------------~~~~vvv 682 (980)
T TIGR01243 619 SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEKGVTDRIVNQLLTELDGLE----------------ELSDVVV 682 (980)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----------------CCCCEEE
T ss_conf 479999999986412873787302111054124421001026899999998640443----------------4366589
Q ss_pred EECCCCCCCCCHHHHH--CCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHCCCCCCHH
Q ss_conf 5204554335545442--0120673264547999998777654121011111-11233202210156
Q gi|254780552|r 157 IAATTRVGLLTNPLQD--RFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDE-AACEIAMRSRGTPR 220 (334)
Q Consensus 157 I~ATt~~~~l~~~l~s--R~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~-al~~ia~~s~Gd~R 220 (334)
T Consensus 683 i~atnrPdi~dPallrPGr~dr~i~vP~Pd~~ar~~ifk~ht~--~~~l~~dv~l~~la~~teGytG 747 (980)
T TIGR01243 683 IAATNRPDILDPALLRPGRLDRLILVPAPDEEARLEIFKIHTR--SMPLAEDVDLEELAKKTEGYTG 747 (980)
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCCCCCCCCHHHHHHHHCCCCC
T ss_conf 8615887423610048874121686059855676767655311--1353013438999865168763