HHsearch alignment for GI: 254780552 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=95.82 E-value=0.0097 Score=36.25 Aligned_cols=40 Identities=35% Similarity=0.575 Sum_probs=25.2
Q ss_pred CCHH-HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHH-HHHHHHHHCCC
Q ss_conf 3979-99999999999866146776707997378855778-99999986189
Q gi|254780552|r 31 TGQV-EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTT-LAQVVARELGV 80 (334)
Q Consensus 31 iGQ~-~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTt-lA~iiA~~l~~ 80 (334)
T Consensus 112 LGLP~~v~~~~-----a~~~~G--L--iLVTGPTGSGKSTTlAsmI-DyIN~ 153 (350)
T TIGR01420 112 LGLPRPVLREL-----AERPRG--L--ILVTGPTGSGKSTTLASMI-DYINK 153 (350)
T ss_pred CCCCHHHHHHH-----HHCCCC--C--EEEECCCCCCHHHHHHHHH-HHHHC
T ss_conf 37987899999-----836699--3--8987688986789999999-78740