HHsearch alignment for GI: 254780552 and conserved domain: TIGR01818
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=98.93 E-value=4.6e-08 Score=68.80 Aligned_cols=210 Identities=24% Similarity=0.283 Sum_probs=133.3
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHH-----
Q ss_conf 87782397999999999999866146776707997378855778999999861---8985312576443346766-----
Q gi|254780552|r 26 TLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL---GVNFRSTSGPVIAKAGDLA----- 97 (334)
Q Consensus 26 ~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l---~~~~~~~s~~~~~~~~dl~----- 97 (334)
T Consensus 133 ~~~~liG~aPAMQevfR~ig-RL~~~--~l~VlI~GESGTGKELVA~ALH~~s~R~~~PFiAlNmAAI--P~~L~ESELF 207 (471)
T TIGR01818 133 DSAELIGEAPAMQEVFRAIG-RLSRS--DLSVLINGESGTGKELVARALHRHSPRARGPFIALNMAAI--PKDLIESELF 207 (471)
T ss_pred CCCCCCCCCCHHHHHHHHHH-HHCCC--CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECHHHC--CHHHHHHHHC
T ss_conf 56212368851689999999-75169--6058885575775899999840137555777327302322--2466554321
Q ss_pred ----HHHHHHH----------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCC
Q ss_conf ----6666410----------16378887576169899999999863475100256787652000466740055204554
Q gi|254780552|r 98 ----ALLTNLE----------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSVKINLSRFTLIAATTRV 163 (334)
Q Consensus 98 ----~~~~~~~----------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~~~~~f~lI~ATt~~ 163 (334)
T Consensus 208 GHEkGAFTGA~~~~~GRFEQA~GGTLFLDEIGDMPl~~QTRLLRVL~~G~f~rVGG~~p----~k~D---VRi~AAThq~ 280 (471)
T TIGR01818 208 GHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDLQTRLLRVLADGEFYRVGGRTP----IKVD---VRIVAATHQD 280 (471)
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEECCCEE----EEEE---EEEEECCCHH
T ss_conf 45653000102556777253488821010216787768777988640786577268202----4550---4667336656
Q ss_pred C-------CCCHHHHHCCC-CEEECCCCC--HHHHHHHHHH----HHHHCCC---HHHHHHHHHHHCCC-CCCHHHHHHH
Q ss_conf 3-------35545442012-067326454--7999998777----6541210---11111112332022-1015678877
Q gi|254780552|r 164 G-------LLTNPLQDRFG-IPIRLNFYE--IEDLKTIVQR----GAKLTGL---AVTDEAACEIAMRS-RGTPRIAGRL 225 (334)
Q Consensus 164 ~-------~l~~~l~sR~~-~~~~~~~~~--~~el~~il~~----~~~~~~i---~~~~~al~~ia~~s-~Gd~R~Alnl 225 (334)
T Consensus 281 Le~lv~~G~FReDLfhRL~Vi~i~lPpLrER~eDi~~L~rhFL~~a~~~l~~~~k~L~~~~~~~L~~~~WPGNVR~LEN~ 360 (471)
T TIGR01818 281 LEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAKELDVEPKLLSPEALEALKRYDWPGNVRELENV 360 (471)
T ss_pred HHHHHHCCCCHHHHHHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 89996558813555551233462168721226689999999999988742865113488999999725889852457789
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 7543334554158864277878765
Q gi|254780552|r 226 LRRVRDFAEVAHAKTITREIADAAL 250 (334)
Q Consensus 226 Le~v~d~a~~~~~~~i~~~~~~~~l 250 (334)
T Consensus 361 cR~l---~~la~~~~v~~~d~~~eL 382 (471)
T TIGR01818 361 CRRL---TVLASGDEVLVSDLPAEL 382 (471)
T ss_pred HHHH---HHHCCCCEEEEEECCHHH
T ss_conf 9999---873467646777757655