HHsearch alignment for GI: 254780552 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=95.36 E-value=0.0074 Score=36.97 Aligned_cols=35 Identities=31% Similarity=0.576 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 999999999998661467767079973788557789999998
Q gi|254780552|r 35 EACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAR 76 (334)
Q Consensus 35 ~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~ 76 (334)
T Consensus 344 ~~l~gi~F~~~aG----e---~laIIGPSgSGKStLaR~~vG 378 (556)
T TIGR01842 344 PTLRGISFAIQAG----E---ALAIIGPSGSGKSTLARILVG 378 (556)
T ss_pred HHHCCCCEEECCC----C---EEEEECCCCCCHHHHHHHHHH
T ss_conf 4227862156377----4---588874786525889878872