HHsearch alignment for GI: 254780552 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=100.00  E-value=0  Score=367.24  Aligned_cols=208  Identities=27%  Similarity=0.337  Sum_probs=179.3

Q ss_pred             HHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCC---------
Q ss_conf             875078987782397999999999999866146776707-9973788557789999998618985312576---------
Q gi|254780552|r   19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGP---------   88 (334)
Q Consensus        19 ~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~---------   88 (334)
T Consensus         5 aRKyRP~~F~d~~GQ~~iv~tL~NAi~~~r-----i~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~   78 (363)
T TIGR02397         5 ARKYRPQTFEDVIGQEHIVKTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKE   78 (363)
T ss_pred             EECCCCCCCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHH
T ss_conf             222378861102351799999999997189-----66234502859976355899999986588-787787777502277


Q ss_pred             ---------------CCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf             ---------------4433467666666410------1637888757616989999999986347510025678765200
Q gi|254780552|r   89 ---------------VIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV  147 (334)
Q Consensus        89 ---------------~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~  147 (334)
T Consensus        79 i~~g~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEE----------------  142 (363)
T TIGR02397        79 INSGSSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEE----------------  142 (363)
T ss_pred             HHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC----------------
T ss_conf             6528986668864865687889999987303687554433588732302865689998765227----------------


Q ss_pred             ECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf             04667400552045543355454420120673264547999998777654121011111112332022101567887775
Q gi|254780552|r  148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR  227 (334)
Q Consensus       148 ~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe  227 (334)
T Consensus       143 --PP~hV~FIlATTE~~KiP~TIlSRCQ-rF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllD  219 (363)
T TIGR02397       143 --PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLD  219 (363)
T ss_pred             --CCCCEEEEEECCCHHHCCCCCEEECE-EECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf             --98762888734871120554021000-312678998999999999998708831778999999962896106889999


Q ss_pred             HHHHHHHHHCCC---CCCHHHHHHHHHHHHC
Q ss_conf             433345541588---6427787876542100
Q gi|254780552|r  228 RVRDFAEVAHAK---TITREIADAALLRLAI  255 (334)
Q Consensus       228 ~v~d~a~~~~~~---~i~~~~~~~~l~~~~i  255 (334)
T Consensus       220 Q~~----~~~~~~DG~i~~~~v~~~lGl~~~  246 (363)
T TIGR02397       220 QAI----SFGNGSDGKITYEDVNEMLGLVDE  246 (363)
T ss_pred             HHH----HHCCCCCCCCCHHHHHHHHCCCCH
T ss_conf             999----826887886578999998357778