HHsearch alignment for GI: 254780552 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=100.00 E-value=0 Score=367.24 Aligned_cols=208 Identities=27% Similarity=0.337 Sum_probs=179.3
Q ss_pred HHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCC---------
Q ss_conf 875078987782397999999999999866146776707-9973788557789999998618985312576---------
Q gi|254780552|r 19 ISLLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHV-LFVGPPGLGKTTLAQVVARELGVNFRSTSGP--------- 88 (334)
Q Consensus 19 ~~~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~-Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~--------- 88 (334)
T Consensus 5 aRKyRP~~F~d~~GQ~~iv~tL~NAi~~~r-----i~HAYLF~GpRGtGKTS~ARIfAKaLNC~-~~~~~PCn~C~~C~~ 78 (363)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVKTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQ-GPDGEPCNECESCKE 78 (363)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHCC-----CCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCHHHH
T ss_conf 222378861102351799999999997189-----66234502859976355899999986588-787787777502277
Q ss_pred ---------------CCCCHHHHHHHHHHHH------CCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE
Q ss_conf ---------------4433467666666410------1637888757616989999999986347510025678765200
Q gi|254780552|r 89 ---------------VIAKAGDLAALLTNLE------DRDVLFIDEIHRLSIIVEEILYPAMEDFQLDLMVGEGPSARSV 147 (334)
Q Consensus 89 ---------------~~~~~~dl~~~~~~~~------~~~vlfiDEihrl~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~ 147 (334)
T Consensus 79 i~~g~~~DviEiDAASN~gVD~IR~l~e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEE---------------- 142 (363)
T TIGR02397 79 INSGSSLDVIEIDAASNNGVDDIRELRENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEE---------------- 142 (363)
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC----------------
T ss_conf 6528986668864865687889999987303687554433588732302865689998765227----------------
Q ss_pred ECCCCCCEEEECCCCCCCCCHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 04667400552045543355454420120673264547999998777654121011111112332022101567887775
Q gi|254780552|r 148 KINLSRFTLIAATTRVGLLTNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKLTGLAVTDEAACEIAMRSRGTPRIAGRLLR 227 (334)
Q Consensus 148 ~~~~~~f~lI~ATt~~~~l~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~~~i~~~~~al~~ia~~s~Gd~R~AlnlLe 227 (334)
T Consensus 143 --PP~hV~FIlATTE~~KiP~TIlSRCQ-rF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllD 219 (363)
T TIGR02397 143 --PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLD 219 (363)
T ss_pred --CCCCEEEEEECCCHHHCCCCCEEECE-EECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf --98762888734871120554021000-312678998999999999998708831778999999962896106889999
Q ss_pred HHHHHHHHHCCC---CCCHHHHHHHHHHHHC
Q ss_conf 433345541588---6427787876542100
Q gi|254780552|r 228 RVRDFAEVAHAK---TITREIADAALLRLAI 255 (334)
Q Consensus 228 ~v~d~a~~~~~~---~i~~~~~~~~l~~~~i 255 (334)
T Consensus 220 Q~~----~~~~~~DG~i~~~~v~~~lGl~~~ 246 (363)
T TIGR02397 220 QAI----SFGNGSDGKITYEDVNEMLGLVDE 246 (363)
T ss_pred HHH----HHCCCCCCCCCHHHHHHHHCCCCH
T ss_conf 999----826887886578999998357778