>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..

Probab=99.87 E-value=1.3e-21 Score=151.63 Aligned_cols=194 Identities=27% Similarity=0.327 Sum_probs=134.5 Q ss_pred HHHHCCHHHHHHHHHHHHHHHH----HCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC---HHHH--- Q ss_conf 7782397999999999999866----14677670799737885577899999986189853125764433---4676--- Q gi|254780552|r 27 LEEFTGQVEACSNLKVFIEAAK----ARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAK---AGDL--- 96 (334) Q Consensus 27 l~dviGQ~~~~~~l~~~i~a~~----~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l~~~~~~~s~~~~~~---~~dl--- 96 (334) T Consensus 496 ~~kIfGQD~AI~~lv~aiK~SrAGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSEYmEKHTVsRLIGs 575 (774) T TIGR02639 496 KAKIFGQDEAIEQLVSAIKRSRAGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEKHTVSRLIGS 575 (774) T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHCC T ss_conf 01315158999999999999874247788816888864798962578899999970820010465044689999874168 Q ss_pred ---------HHHHHHH---HCCCHHHHHHHHHCCHHHHHHHHHHHHC------------CCCC--CCCCCCCCCCEEECC Q ss_conf ---------6666641---0163788875761698999999998634------------7510--025678765200046 Q gi|254780552|r 97 ---------AALLTNL---EDRDVLFIDEIHRLSIIVEEILYPAMED------------FQLD--LMVGEGPSARSVKIN 150 (334) Q Consensus 97 ---------~~~~~~~---~~~~vlfiDEihrl~~~~q~~Ll~~mE~------------~~i~--i~~~~~~~a~~~~~~ 150 (334) T Consensus 576 PPGYVGfEqGGLLT~AvrK~P~cVLLLDEIEKAHpDI~NILLQVMD~AtLTDN~GrKaDFRNVILIMTS-NaGa~E~~~- 653 (774) T TIGR02639 576 PPGYVGFEQGGLLTDAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS-NAGAREMSK- 653 (774) T ss_pred CCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECC-CCCCCCCCC- T ss_conf 888513167772122331288535423466663133666787663354340588857631136888403-700102367- Q ss_pred CCCCEEEECCCCC---------CCC-CHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH---------CCCHHHHHHHHHH Q ss_conf 6740055204554---------335-54544201206732645479999987776541---------2101111111233 Q gi|254780552|r 151 LSRFTLIAATTRV---------GLL-TNPLQDRFGIPIRLNFYEIEDLKTIVQRGAKL---------TGLAVTDEAACEI 211 (334) Q Consensus 151 ~~~f~lI~ATt~~---------~~l-~~~l~sR~~~~~~~~~~~~~el~~il~~~~~~---------~~i~~~~~al~~i 211 (334) T Consensus 654 -~---~iGF~~~~~~~~~~~Aikk~F~PEFRNRLDaii~F~~L~~~~~~~i~~K~l~el~~~L~eK~v~l~l~~~a~~~L 729 (774) T TIGR02639 654 -N---PIGFGGERVEDKSEKAIKKLFSPEFRNRLDAIIAFNDLSEEVAEKIVKKFLDELQKQLNEKNVELELTDDAIKYL 729 (774) T ss_pred -C---CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHHHHHH T ss_conf -7---644255541233488897315874201334644169988999999999999999975530653787647899999 Q ss_pred HCCCC---CCHHHHHHHH Q ss_conf 20221---0156788777 Q gi|254780552|r 212 AMRSR---GTPRIAGRLL 226 (334) Q Consensus 212 a~~s~---Gd~R~AlnlL 226 (334) T Consensus 730 A~KGY~~efGARpl~R~I 747 (774) T TIGR02639 730 AEKGYDEEFGARPLARVI 747 (774) T ss_pred HHHCCCCCCCCCHHHHHH T ss_conf 863678110554489998

HHsearch alignment for GI: 254780552 and conserved domain: TIGR02639