HHsearch alignment for GI: 254780552 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=99.62 E-value=2.5e-15 Score=113.23 Aligned_cols=252 Identities=21% Similarity=0.295 Sum_probs=157.7
Q ss_pred HCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHC----CCC-------CCCCC-CC
Q ss_conf 5078987782397999999999999866146776707997378855778999999861----898-------53125-76
Q gi|254780552|r 21 LLRPRTLEEFTGQVEACSNLKVFIEAAKARAEALDHVLFVGPPGLGKTTLAQVVAREL----GVN-------FRSTS-GP 88 (334)
Q Consensus 21 ~lRP~~l~dviGQ~~~~~~l~~~i~a~~~~~~~~~h~Lf~GPpG~GKTtlA~iiA~~l----~~~-------~~~~s-~~ 88 (334)
T Consensus 201 ~A~~GkiDPLIGRE~EleRtiQvLC-RR~KNNP----l~VGEPGVGKTAI~EGLA~~I~~~~kvPe~Lkn~~IY~LDmG~ 275 (774)
T TIGR02639 201 KAKNGKIDPLIGREDELERTIQVLC-RRKKNNP----LLVGEPGVGKTAIVEGLAQRIAEGQKVPEVLKNAKIYSLDMGT 275 (774)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHC-CCCCCCC----CEECCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECHHH
T ss_conf 9860887873456688742333203-4567887----2044888644899999999864156467002478345404345
Q ss_pred CCCC---HHH----HHHHHHHH--HCCC-HHHHHHHHHC---------CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEC
Q ss_conf 4433---467----66666641--0163-7888757616---------98999999998634751002567876520004
Q gi|254780552|r 89 VIAK---AGD----LAALLTNL--EDRD-VLFIDEIHRL---------SIIVEEILYPAMEDFQLDLMVGEGPSARSVKI 149 (334)
Q Consensus 89 ~~~~---~~d----l~~~~~~~--~~~~-vlfiDEihrl---------~~~~q~~Ll~~mE~~~i~i~~~~~~~a~~~~~ 149 (334)
T Consensus 276 LLAGTKYRGDFE~RLK~V~~Ei~~~~~anILFIDEIHTIVGAGATSGGsmDASNLLKPaL~~G~i--------------- 340 (774)
T TIGR02639 276 LLAGTKYRGDFEERLKAVVSEIEKEPNANILFIDEIHTIVGAGATSGGSMDASNLLKPALASGKI--------------- 340 (774)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHCCCE---------------
T ss_conf 64102454247899999999985289995466411010331787875155244321125307877---------------
Q ss_pred CCCCCEEEECCCCCC--C---CCHHHHHCCCCEEECCCCCHHHHHHHHHHH----HHHCCCHHHHHHHHHHHCCC-----
Q ss_conf 667400552045543--3---554544201206732645479999987776----54121011111112332022-----
Q gi|254780552|r 150 NLSRFTLIAATTRVG--L---LTNPLQDRFGIPIRLNFYEIEDLKTIVQRG----AKLTGLAVTDEAACEIAMRS----- 215 (334)
Q Consensus 150 ~~~~f~lI~ATt~~~--~---l~~~l~sR~~~~~~~~~~~~~el~~il~~~----~~~~~i~~~~~al~~ia~~s----- 215 (334)
T Consensus 341 -----RCIGsTTy~EY~~~FeKDrALsRRFQ-KIDv~EPs~eet~~ILkGLk~~YE~fH~V~Y~~eal~~Av~LS~ryI~ 414 (774)
T TIGR02639 341 -----RCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEQYEEFHHVKYSDEALEAAVELSARYIN 414 (774)
T ss_pred -----EEECCCCHHHHHCHHHCCCCCCCCCC-EECCCCCCHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHHHHHCC
T ss_conf -----86226524864111010202165423-311795788899999986554201325011386999999999888602
Q ss_pred -CCCHHHHHHHHHHHHHHH----HHHCCCC--------------CCHHHHHHHHHHH-HCCCCHHHHHH-HHHHHHHHHH
Q ss_conf -101567887775433345----5415886--------------4277878765421-00000046776-8899999975
Q gi|254780552|r 216 -RGTPRIAGRLLRRVRDFA----EVAHAKT--------------ITREIADAALLRL-AIDKMGFDQLD-LRYLTMIARN 274 (334)
Q Consensus 216 -~Gd~R~AlnlLe~v~d~a----~~~~~~~--------------i~~~~~~~~l~~~-~id~~Gl~~~d-~~~L~~l~~~ 274 (334)
T Consensus 415 DRfLPDKAIDviDEaGA~~~l~~~~~~~~~eadekGleetalPev~~~diE~vvak~a~iP~~~~s~ddD~~~L~~L~~~ 494 (774)
T TIGR02639 415 DRFLPDKAIDVIDEAGAAFRLRAKAKKKANEADEKGLEETALPEVNVKDIEEVVAKMAKIPVKTVSSDDDREKLKNLEKE 494 (774)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHH
T ss_conf 57898543228899999999712027764320112530004787854449999988718994154264479887204476
Q ss_pred HC----CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 18----66206999999828745674678999999834305
Q gi|254780552|r 275 FG----GGPVGIETISAGLSEPRDAIEDLIEPYMIQQGFIQ 311 (334)
Q Consensus 275 ~~----~g~~~~~~isA~~ks~RgS~~daa~~yL~r~g~~~ 311 (334)
T Consensus 495 L~~kIfGQD~---AI~~lv~aiK----------~SrAGl~~ 522 (774)
T TIGR02639 495 LKAKIFGQDE---AIEQLVSAIK----------RSRAGLGE 522 (774)
T ss_pred HHCCCCCHHH---HHHHHHHHHH----------HHHHHCCC
T ss_conf 3013151589---9999999999----------98742477